mRNA_H-elongata_contig158417.3787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158417.3787.1
Unique NamemRNA_H-elongata_contig158417.3787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Match: D8LGL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 5.620e-31
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   16 KHKLLIFSIIVLIFIAIGAWHSEDMINAWWAMWTVPIIFLGVWLLFDCIFVDDKAFIFDHDYE 204
            KHKLLIF II+L FIA GAWHSEDM   +WAMWTVPIIFL VWLLFDCIFVDDKAF+FDHDYE
Sbjct:    6 KHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYE 68
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BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Match: A0A836CKG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.620e-19
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   16 KHKLLIFSIIVLIFIAIGAWHSEDMIN-AWWAMWTVPIIFLGVWLLFDCIFV-DDKAFIFDHDYE 204
            +HKL+   II    +A  AW++ D  N AWWAMWTVPI+FL  WLL DC+FV DDKAFIFDHDYE
Sbjct:    6 RHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYE 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158417.3787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGL5_ECTSI5.620e-3184.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKG6_9STRA1.620e-1963.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158417contigH-elongata_contig158417:504..707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LGL5
EggNOG OGs2E174@1,2S8JA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002660.1
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.7763212-CDS-H-elongata_contig158417:503..7071622929933.7763212-CDS-H-elongata_contig158417:503..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158417 504..707 -
1691679213.4954417-CDS-H-elongata_contig158417:503..7071691679213.4954417-CDS-H-elongata_contig158417:503..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158417 504..707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158417.3787.1prot_H-elongata_contig158417.3787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158417 504..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158417.3787.1

>prot_H-elongata_contig158417.3787.1 ID=prot_H-elongata_contig158417.3787.1|Name=mRNA_H-elongata_contig158417.3787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVVLIKHKLLIFSIIVLIFIAIGAWHSEDMINAWWAMWTVPIIFLGVWLL
FDCIFVDDKAFIFDHDYE
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mRNA from alignment at H-elongata_contig158417:504..707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158417.3787.1 ID=mRNA_H-elongata_contig158417.3787.1|Name=mRNA_H-elongata_contig158417.3787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig158417:504..707- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTCCTCATTAAGCATAAACTTCTTATCTTCTCCATCATCGTGCT
GATTTTCATCGCGATCGGGGCATGGCACAGCGAGGACATGATCAACGCTT
GGTGGGCGATGTGGACCGTGCCTATAATCTTCCTCGGGGTATGGCTTCTG
TTCGACTGCATTTTCGTTGACGACAAGGCCTTCATTTTCGACCACGACTA
CGAG
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Coding sequence (CDS) from alignment at H-elongata_contig158417:504..707-

>mRNA_H-elongata_contig158417.3787.1 ID=mRNA_H-elongata_contig158417.3787.1|Name=mRNA_H-elongata_contig158417.3787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig158417:504..707- (Himanthalia elongata Himel1 dioecious)
ATGGTGGTCCTCATTAAGCATAAACTTCTTATCTTCTCCATCATCGTGCT
GATTTTCATCGCGATCGGGGCATGGCACAGCGAGGACATGATCAACGCTT
GGTGGGCGATGTGGACCGTGCCTATAATCTTCCTCGGGGTATGGCTTCTG
TTCGACTGCATTTTCGTTGACGACAAGGCCTTCATTTTCGACCACGACTA
CGAGATGGTGGTCCTCATTAAGCATAAACTTCTTATCTTCTCCATCATCG
TGCTGATTTTCATCGCGATCGGGGCATGGCACAGCGAGGACATGATCAAC
GCTTGGTGGGCGATGTGGACCGTGCCTATAATCTTCCTCGGGGTATGGCT
TCTGTTCGACTGCATTTTCGTTGACGACAAGGCCTTCATTTTCGACCACG
ACTACGAG
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