prot_H-elongata_contig156633.3694.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156633.3694.1
Unique Nameprot_H-elongata_contig156633.3694.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length125
Homology
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 105 bits (262), Expect = 2.080e-25
Identity = 50/123 (40.65%), Postives = 84/123 (68.29%), Query Frame = 0
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYR--DSRKQVGLLKKAMYGLVDT 121
            ++V++P+ K  +G R +F  K   DG IE+Y+ RLVA+G+ +  GI Y+E+ +P     ++R+VL++ A  GW+  QLDV  A+L  ++EEE+Y+E+P+ ++  + R +V LLKKA+YGL  +
Sbjct:   24 EIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQS 146          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 107 bits (268), Expect = 1.060e-24
Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 0
Query:    3 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGL 118
            V RP+ + ++G++ VFK K   DG++EKY+ RLVAQGF +V+GI Y E+ +P     SIR++L++ A   WE  Q+DV  A+L  ++EEEIY+++P  ++ S   V  LKKA+YGL
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGL 1145          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 101 bits (251), Expect = 1.790e-24
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 0
Query:    2 VVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVY--------RDSRKQVGLLKKAMYGLVDTG 122
            +V+RP+GKTV+G+R VF+ K+  DG +E+ + RLVA+GF ++ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++EEEIY+E+P+          +D   +V  ++KA+YGL  +G
Sbjct:   51 LVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 102 bits (255), Expect = 5.900e-23
Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 118
            +VV+ P  K  +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E  SP     S+R  L+++ A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL
Sbjct:  583 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 701          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 95.5 bits (236), Expect = 9.310e-23
Identity = 46/114 (40.35%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    6 PKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 118
            P GK ++G R V+K K    G +EKY+ RLVA+GF +++G  + E+ +P     ++R +LS+  A GWE  Q+DV  A+L  D+EEE+Y+++P+ Y+  ++  V  L+K++YGL
Sbjct:   20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGL 133          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 102 bits (253), Expect = 9.850e-23
Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 118
            +VV+ P  K  +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E+ SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL
Sbjct:  114 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 232          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 102 bits (253), Expect = 1.110e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 0
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 122
            ++VE PKG+ V+G+R V+K K+D+DGR  +Y+ RLVAQGF +  GI + ++ +P    ++IR+++S+  AL      +D+  AYL   ++EE+Y++ P  Y D   +V LL++A+YGL   G
Sbjct:  726 ELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAG 847          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 100 bits (248), Expect = 1.330e-22
Identity = 48/121 (39.67%), Postives = 80/121 (66.12%), Query Frame = 0
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDT 121
            ++V+ P+GK ++G + VF  K   DG +E+Y+ RLVA+GF +  G+ Y+E+ +P     S+R++LS+ AA  W   QLDV  A+L  D+EEE+++ LP  + ++  +V  LKK++YGL  +
Sbjct:   17 KLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQS 137          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 101 bits (252), Expect = 1.500e-22
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 0
Query:    3 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 122
            VERP+ + V+  + VFK K   DG IEKY+ RLVA+GF +V+G+ + E+ +P    AS+R +L++ A L  E  Q+DV  A+L  D++EEIY+++P  +R S   V  L KA+YGL   G
Sbjct:  902 VERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 101 bits (252), Expect = 1.500e-22
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 0
Query:    3 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 122
            VERP+ + V+  + VFK K   DG IEKY+ RLVA+GF +V+G+ + E+ +P    AS+R +L++ A L  E  Q+DV  A+L  D++EEIY+++P  +R S   +  L KA+YGL   G
Sbjct:  638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA2.080e-2540.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.060e-2445.69Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9Y7J8_LYGHE1.790e-2440.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI5.900e-2342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JLR7_TRIPR9.310e-2340.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI9.850e-2342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TV96_9BASI1.110e-2240.16Integrase catalytic domain-containing protein n=1 ... [more]
UPI00192EECC51.330e-2239.67uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A0A401H317_9APHY1.500e-2244.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY1.500e-2243.33Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..122
e-value: 5.7E-28
score: 98.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..118
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156633contigH-elongata_contig156633:897..1271 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156633.3694.1mRNA_H-elongata_contig156633.3694.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156633 897..1271 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156633.3694.1 ID=prot_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEE
SSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEV
YRDSRKQVGLLKKAMYGLVDTGLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like