mRNA_H-elongata_contig156633.3694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156633.3694.1
Unique NamemRNA_H-elongata_contig156633.3694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 105 bits (262), Expect = 2.080e-25
Identity = 50/123 (40.65%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYR--DSRKQVGLLKKAMYGLVDT 363
            ++V++P+ K  +G R +F  K   DG IE+Y+ RLVA+G+ +  GI Y+E+ +P     ++R+VL++ A  GW+  QLDV  A+L  ++EEE+Y+E+P+ ++  + R +V LLKKA+YGL  +
Sbjct:   24 EIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQS 146          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 107 bits (268), Expect = 1.060e-24
Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGL 354
            V RP+ + ++G++ VFK K   DG++EKY+ RLVAQGF +V+GI Y E+ +P     SIR++L++ A   WE  Q+DV  A+L  ++EEEIY+++P  ++ S   V  LKKA+YGL
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGL 1145          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 101 bits (251), Expect = 1.790e-24
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 VVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVY--------RDSRKQVGLLKKAMYGLVDTG 366
            +V+RP+GKTV+G+R VF+ K+  DG +E+ + RLVA+GF ++ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++EEEIY+E+P+          +D   +V  ++KA+YGL  +G
Sbjct:   51 LVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 102 bits (255), Expect = 5.900e-23
Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
            +VV+ P  K  +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E  SP     S+R  L+++ A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL
Sbjct:  583 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 701          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 95.5 bits (236), Expect = 9.310e-23
Identity = 46/114 (40.35%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   16 PKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
            P GK ++G R V+K K    G +EKY+ RLVA+GF +++G  + E+ +P     ++R +LS+  A GWE  Q+DV  A+L  D+EEE+Y+++P+ Y+  ++  V  L+K++YGL
Sbjct:   20 PVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGL 133          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 102 bits (253), Expect = 9.850e-23
Identity = 51/119 (42.86%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRK-QVGLLKKAMYGL 354
            +VV+ P  K  +G + ++K K + DG IE+Y+ RLVAQGF +++GI Y+E+ SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE ++ + K +V  L+K++YGL
Sbjct:  114 KVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGL 232          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 102 bits (253), Expect = 1.110e-22
Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
            ++VE PKG+ V+G+R V+K K+D+DGR  +Y+ RLVAQGF +  GI + ++ +P    ++IR+++S+  AL      +D+  AYL   ++EE+Y++ P  Y D   +V LL++A+YGL   G
Sbjct:  726 ELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAG 847          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 100 bits (248), Expect = 1.330e-22
Identity = 48/121 (39.67%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDT 363
            ++V+ P+GK ++G + VF  K   DG +E+Y+ RLVA+GF +  G+ Y+E+ +P     S+R++LS+ AA  W   QLDV  A+L  D+EEE+++ LP  + ++  +V  LKK++YGL  +
Sbjct:   17 KLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQS 137          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 101 bits (252), Expect = 1.500e-22
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
            VERP+ + V+  + VFK K   DG IEKY+ RLVA+GF +V+G+ + E+ +P    AS+R +L++ A L  E  Q+DV  A+L  D++EEIY+++P  +R S   V  L KA+YGL   G
Sbjct:  902 VERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021          
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 101 bits (252), Expect = 1.500e-22
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    7 VERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEESSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEVYRDSRKQVGLLKKAMYGLVDTG 366
            VERP+ + V+  + VFK K   DG IEKY+ RLVA+GF +V+G+ + E+ +P    AS+R +L++ A L  E  Q+DV  A+L  D++EEIY+++P  +R S   +  L KA+YGL   G
Sbjct:  638 VERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156633.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA2.080e-2540.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.060e-2445.69Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9Y7J8_LYGHE1.790e-2440.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI5.900e-2342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JLR7_TRIPR9.310e-2340.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI9.850e-2342.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TV96_9BASI1.110e-2240.16Integrase catalytic domain-containing protein n=1 ... [more]
UPI00192EECC51.330e-2239.67uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A0A401H317_9APHY1.500e-2244.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY1.500e-2243.33Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156633contigH-elongata_contig156633:897..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score98.2
Seed ortholog evalue2.9e-18
Seed eggNOG ortholog981085.XP_010101443.1
KEGG koko:K16743
EggNOG free text desc.Abnormal spindle-like microcephaly-associated protein homolog
EggNOG OGs37R7M@33090,3GGW1@35493,4JJ08@91835,COG2801@1,KOG0017@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.6418574-CDS-H-elongata_contig156633:896..12711622929924.6418574-CDS-H-elongata_contig156633:896..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156633 897..1271 +
1691679210.2931004-CDS-H-elongata_contig156633:896..12711691679210.2931004-CDS-H-elongata_contig156633:896..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156633 897..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156633.3694.1prot_H-elongata_contig156633.3694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156633 897..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156633.3694.1

>prot_H-elongata_contig156633.3694.1 ID=prot_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
QVVERPKGKTVLGTRVVFKRKIDKDGRIEKYRCRLVAQGFRKVKGIHYEE
SSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEIYVELPEV
YRDSRKQVGLLKKAMYGLVDTGLL*
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mRNA from alignment at H-elongata_contig156633:897..1271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156633.3694.1 ID=mRNA_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig156633:897..1271+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGT TTTCAAGCGCAAAATCGACAAGGATGGAAGAATCGAGAAGTATAGATGTC GTCTCGTGGCGCAGGGTTTCAGGAAGGTCAAAGGCATACACTACGAGGAA TCCTCCTCTCCGACTCCTGCCCAGGCCAGCATTAGGATGGTACTCAGCAT GATCGCGGCTCTCGGCTGGGAAGCGCGGCAGCTGGACGTCGACATGGCCT ACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGTA TACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGG ACTCGTCGACACCGGGCTGCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156633:897..1271+

>mRNA_H-elongata_contig156633.3694.1 ID=mRNA_H-elongata_contig156633.3694.1|Name=mRNA_H-elongata_contig156633.3694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig156633:897..1271+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGT
TTTCAAGCGCAAAATCGACAAGGATGGAAGAATCGAGAAGTATAGATGTC
GTCTCGTGGCGCAGGGTTTCAGGAAGGTCAAAGGCATACACTACGAGGAA
TCCTCCTCTCCGACTCCTGCCCAGGCCAGCATTAGGATGGTACTCAGCAT
GATCGCGGCTCTCGGCTGGGAAGCGCGGCAGCTGGACGTCGACATGGCCT
ACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGTA
TACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGG
ACTCGTCGACACCGGGCTGCTGTGACAGGTGGTGGAGCGCCCAAAAGGGA
AGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGAT
GGAAGAATCGAGAAGTATAGATGTCGTCTCGTGGCGCAGGGTTTCAGGAA
GGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTCCTGCCCAGG
CCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGGAAGCG
CGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGTGGAGGAGGA
GATCTACGTTGAGCTCCCGGAGGTATACCGTGACTCCAGGAAGCAAGTCG
GCCTACTAAAGAAGGCAATGTACGGACTCGTCGACACCGGGCTGCTGTGA
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