prot_H-elongata_contig152585.3473.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig152585.3473.1
Unique Nameprot_H-elongata_contig152585.3473.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.400e-43
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            MS++EA  +A+KMIN EFDFNDFLKQ KMMK MG+LGGVA M+PGMAGK++PQQLNQ EEG++RAEGLI+ MT EER+ PKLLI DPTSQ R RRIA+DAGVKLSAVS
Sbjct:  375 MSEEEAAKLAKKMINAEFDFNDFLKQAKMMKGMGSLGGVANMIPGMAGKITPQQLNQAEEGVQRAEGLIKFMTPEERRTPKLLILDPTSQARCRRIARDAGVKLSAVS 482          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7R9WX50_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX50_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.630e-25
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAG 101
            +SD+EA  M  KM+  EFDF+DFLKQ K++ NMG+L GVAKM+PGMAG +   Q+   EE +K+ E +I  MT +ER  P+LLISD T++ RL+RIAK +G
Sbjct:   28 VSDEEARLMQEKMMKAEFDFDDFLKQAKLVSNMGSLAGVAKMMPGMAGNIDAGQIRNAEERMKKNEAMICSMTKKERAQPELLISDATARSRLQRIAKGSG 128          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7R9U2M9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.140e-24
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            +S+K+AE M  KM+++ FDF+DFL+Q KM+ NMG++ GV KMLPGMAG+LS  QL   E+ + RAEGLI+ MT +ER+ P LLI D +++ RL RIA  +G  L   S
Sbjct:  394 VSEKQAERMVNKMLDQTFDFDDFLQQTKMVSNMGSMAGVLKMLPGMAGQLSNDQLRMAEKRMARAEGLIQCMTPKERKTPDLLIRDRSARARLIRIATASGQSLDEAS 501          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A7S1U8S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.170e-23
Identity = 55/105 (52.38%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLS 105
            +S  +AE M  KM+++ FDF+DFLKQ KM+ NMGN+ GV KMLPGMAGK+   QL + +  ++RAE LI+ MT EER++P LLI D ++++RL RIA+ AG++++
Sbjct:  388 VSKDDAEVMMNKMLDQTFDFDDFLKQAKMINNMGNMAGVMKMLPGMAGKIDNNQLREGQRRMRRAEKLIKEMTPEERKEPDLLIRDRSARERLGRIAEAAGLEIN 492          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A448Z1S5_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z1S5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.750e-23
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAV 107
            M+DKEA+ M  K+ N EFDF+DFLKQ KM+  MG+LGGVAKM+PGM G +S +QL   E+ +K+ E +I VMT EER++P LLI D  S++RL+RIAK + + +  V
Sbjct:  411 MTDKEAKLMEEKVKNAEFDFDDFLKQAKMVSKMGSLGGVAKMMPGM-GSVSQEQLIAAEKRLKKNEAMIAVMTEEERKNPDLLIKDSKSRERLQRIAKFSEMDIKDV 516          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: UPI0017474A0C (signal recognition particle protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017474A0C)

HSP 1 Score: 100 bits (248), Expect = 2.430e-22
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 0
Query:    5 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            +AE +  K++  +FDF DFLKQ +MMKNMG+L G+ K++PGM GK+S +QL Q E  +KRAE +I  MT EER++P LL   P+ +QR   IAK AG  L+ VS
Sbjct:  314 DAEQLQEKILTAKFDFTDFLKQTRMMKNMGSLAGIVKLIPGMGGKISDEQLQQGEAQLKRAEAMISSMTIEERRNPDLLAGSPSRRQR---IAKGAGYSLNDVS 414          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C)

HSP 1 Score: 99.8 bits (247), Expect = 3.420e-22
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    5 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            +AE + +K++  +FDF+DFLKQ ++MKNMG+LGG+ K++PGMAGK+S  QL Q E  +KR E +I  MT +ER++P+LL   P+   R RRIAK AG +   VS
Sbjct:  314 DAEKLQKKILEAQFDFDDFLKQTRLMKNMGSLGGIMKLIPGMAGKISDDQLQQGEAQLKRVEAMINSMTRDERKNPELLSGSPS---RRRRIAKGAGYQEKDVS 414          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: K9RTX2_SYNP3 (Signal recognition particle protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RTX2_SYNP3)

HSP 1 Score: 99.4 bits (246), Expect = 4.390e-22
Identity = 52/104 (50.00%), Postives = 79/104 (75.96%), Query Frame = 0
Query:    5 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            +AE+M RK++  +FDFNDFLKQ +++KNMG+LGG+ K++PGM GK+S +QL Q E  +KRAE +I  MT +ER++P+LL + P+   R +R+A+ +G KL  V+
Sbjct:  314 DAENMTRKILEAQFDFNDFLKQTRLLKNMGSLGGIMKLIPGM-GKISNEQLEQGESQLKRAESMINSMTRQERENPQLLANSPS---RKKRVAQGSGHKLEDVA 413          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A846A4R2_9CYAN (Signal recognition particle protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A4R2_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 1.080e-21
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    5 EAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVS 108
            +AE +  K++  +FDFNDFLKQ ++MKNMG+LGG+ K++PGMA K+S  QL Q E+ +KR E +I  MT +ER++P+LL S P+   R RRIA  +G K   VS
Sbjct:  238 DAEKLQEKILEAKFDFNDFLKQTRLMKNMGSLGGIMKLIPGMANKISSDQLEQGEKQLKRVESMINSMTLQERKNPELLSSSPS---RRRRIASGSGHKEKDVS 338          
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.080e-21
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKLSPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDAGVKLSAVSVSV 111
            +S+ E   +++KM++  FDFNDFL+Q+K+++NMG++  VAKM+PGMAGKLS QQ++  E+  +RA+  I +M  EER +P LLI D  + QR RRIAK A V+   V+  +
Sbjct:  399 VSEAEMAQLSQKMMDATFDFNDFLEQSKVVRNMGSMANVAKMIPGMAGKLSQQQMDDAEDRAERADLFISLMLPEERTNPDLLIRDAAALQRQRRIAKAAQVRPQDVAAFI 509          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152585.3473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN22_ECTSI3.400e-4375.93PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A7R9WX50_9STRA3.630e-2554.46Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9U2M9_9STRA7.140e-2452.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U8S0_9STRA1.170e-2352.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A448Z1S5_9STRA8.750e-2354.21SRP54 domain-containing protein n=2 Tax=Pseudo-nit... [more]
UPI0017474A0C2.430e-2251.92signal recognition particle protein n=1 Tax=Phormi... [more]
UPI0019F74F5C3.420e-2250.96Signal recognition particle protein n=1 Tax=Leptol... [more]
K9RTX2_SYNP34.390e-2250.00Signal recognition particle protein n=1 Tax=Synech... [more]
A0A846A4R2_9CYAN1.080e-2150.96Signal recognition particle protein n=1 Tax=Leptol... [more]
A0A835YMH5_9STRA1.080e-2147.75SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..75
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 2..111
e-value: 1.3E-26
score: 95.2
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 3..107
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 17..108
e-value: 2.0E-20
score: 73.2
IPR004780Signal recognition particle proteinPANTHERPTHR11564:SF7SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTICcoord: 1..108
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 1..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152585contigH-elongata_contig152585:296..1350 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152585.3473.1mRNA_H-elongata_contig152585.3473.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig152585 296..1350 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig152585.3473.1 ID=prot_H-elongata_contig152585.3473.1|Name=mRNA_H-elongata_contig152585.3473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MSDKEAEDMARKMINKEFDFNDFLKQNKMMKNMGNLGGVAKMLPGMAGKL
SPQQLNQVEEGIKRAEGLIEVMTSEERQDPKLLISDPTSQQRLRRIAKDA
GVKLSAVSVSVLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M
IPR004780SRP
IPR022941SRP54