prot_H-elongata_contig151143.3397.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig151143.3397.1
Unique Nameprot_H-elongata_contig151143.3397.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.830e-48
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            +GRLYDHACC +LYEMTVEDG+AVVTSVE RRVTKARPIPM TVELQKRASRFCHI SERTMHVAEALYQRGIISYPRTETEKFKREFDI
Sbjct:   68 RGRLYDHACCAILYEMTVEDGVAVVTSVEARRVTKARPIPMSTVELQKRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDI 157          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A8J6CBF4_DIALT (DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBF4_DIALT)

HSP 1 Score: 109 bits (273), Expect = 6.340e-26
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            +GRL+D   C VLYEM VE+  A V +V  RR T+A+PIP+ TVELQ+ ASR   I S+RTM +AE+LYQRG +SYPRTET+KFK   D+
Sbjct:  257 RGRLFDRLACVVLYEMCVEEPEATVVAVNRRRTTRAKPIPLATVELQREASRKLRIASDRTMAIAESLYQRGYLSYPRTETDKFKEGTDL 346          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.160e-25
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            +GRL+D      L E+  + G AVVT+V  R  T+ RP+PM TVELQ+RASRF  IPSER M  AEALYQRG++SYPRTET+ F RE D+
Sbjct:   85 RGRLFDRGVAAALAELCADAGTAVVTAVSARPQTRRRPLPMSTVELQRRASRFLRIPSERAMAAAEALYQRGVLSYPRTETDAFSRETDL 174          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A024GUU9_9STRA (DNA topoisomerase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GUU9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-24
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 0
Query:    4 RLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            RLYD  CC V+YE+ V++ IA +TSVE +   K +P+P+ TVELQKRASR+  I SE TM  AE LY +G ISYPRTET KFK   D+
Sbjct:  261 RLYDRLCCLVIYEILVQNPIAKITSVEKKPTCKRKPLPLTTVELQKRASRWLRISSEETMKAAEHLYNKGFISYPRTETSKFKEGTDL 348          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A024GV12_9STRA (DNA topoisomerase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GV12_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.410e-24
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 0
Query:    4 RLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            RLYD  CC V+YE+ V++ IA +TSVE +   K +P+P+ TVELQKRASR+  I SE TM  AE LY +G ISYPRTET KFK   D+
Sbjct:  261 RLYDRLCCLVIYEILVQNPIAKITSVEKKPTCKRKPLPLTTVELQKRASRWLRISSEETMKAAEHLYNKGFISYPRTETSKFKEGTDL 348          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A7I8L3W2_SPIIN (DNA topoisomerase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L3W2_SPIIN)

HSP 1 Score: 101 bits (252), Expect = 4.290e-23
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            +GRL+D+ C  ++YEM VE  IA V +V+ ++  K  P P+ TVELQKRASR+  I SERTM VAE LYQ G ISYPRTET+ F    D+
Sbjct:  271 RGRLFDYTCSVIIYEMCVEQPIATVKNVKQQQKLKYPPFPLSTVELQKRASRYFRISSERTMKVAEELYQAGFISYPRTETDSFSVNTDL 360          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A0D1WU41_9EURO (DNA topoisomerase n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1WU41_9EURO)

HSP 1 Score: 100 bits (250), Expect = 7.660e-23
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 0
Query:    5 LYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 92
            L+D A  T+L+E  +++ +A VT V+ +  +K RP+P+ TVELQK+ SRF H+ S + M VAE LYQ+G ISYPRTET++F REFD +
Sbjct:  261 LFDRAAVTILFEACLDEKLATVTKVQKKPTSKWRPLPLTTVELQKQGSRFLHMTSHQVMSVAEKLYQKGFISYPRTETDQFPREFDFQ 348          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A1D1YBY8_9ARAE (DNA topoisomerase (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBY8_9ARAE)

HSP 1 Score: 100 bits (250), Expect = 8.000e-23
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 92
            +GRL+D+ C  +LYEM VE  IA V +V  +   K  P P+ TVELQKRASR+  I SERTM VAE LYQ G ISYPRTET+ F    D++
Sbjct:  280 RGRLFDYTCSVILYEMCVEQPIATVKNVRHQEKLKYPPYPLSTVELQKRASRYFRISSERTMKVAEELYQAGFISYPRTETDGFSVNTDLR 370          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: A0A8H4A1Y6_GIGMA (DNA topoisomerase n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A1Y6_GIGMA)

HSP 1 Score: 99.4 bits (246), Expect = 2.760e-22
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK 92
            +  L+D   C ++YE  +E+  A V  V+ + V K +P P+ TVELQK  SR+ HI S+R MHVAE LY +G+ISYPRTET++F ++FD +
Sbjct:  254 RNHLFDRLACVIIYEKCLENPTATVVEVKSKEVKKWKPYPLTTVELQKTGSRYLHISSDRLMHVAEQLYVKGLISYPRTETDQFDKQFDFR 344          
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Match: UPI000D2F27BE (DNA topoisomerase 3-alpha isoform X2 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI000D2F27BE)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-22
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0
Query:    2 QGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKRASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDI 91
            +G L+D+ C  ++YEM +E+  A VT V P+   K  P P+ T+EL+KRASR+  + SERTM VAE LYQ G ISYPRTET+ F    D+
Sbjct:  264 RGHLFDYTCAVIIYEMCIEEPTATVTKVTPKEKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDL 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151143.3397.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI2.830e-4892.22DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A8J6CBF4_DIALT6.340e-2658.89DNA topoisomerase n=1 Tax=Diacronema lutheri TaxID... [more]
A0A835YM61_9STRA1.160e-2558.89DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A024GUU9_9STRA1.330e-2457.95DNA topoisomerase n=1 Tax=Albugo candida TaxID=653... [more]
A0A024GV12_9STRA1.410e-2457.95DNA topoisomerase n=2 Tax=Albugo candida TaxID=653... [more]
A0A7I8L3W2_SPIIN4.290e-2355.56DNA topoisomerase n=2 Tax=Spirodela intermedia Tax... [more]
A0A0D1WU41_9EURO7.660e-2352.27DNA topoisomerase n=1 Tax=Exophiala sideris TaxID=... [more]
A0A1D1YBY8_9ARAE8.000e-2356.04DNA topoisomerase (Fragment) n=1 Tax=Anthurium amn... [more]
A0A8H4A1Y6_GIGMA2.760e-2248.35DNA topoisomerase n=1 Tax=Gigaspora margarita TaxI... [more]
UPI000D2F27BE2.780e-2251.11DNA topoisomerase 3-alpha isoform X2 n=1 Tax=Medic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013826DNA topoisomerase, type IA, central region, subdomain 3GENE3D1.10.290.10coord: 38..92
e-value: 8.5E-21
score: 76.4
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 2..91
e-value: 1.7E-19
score: 70.2
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 2..91
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 2..91
IPR023406DNA topoisomerase, type IA, active sitePROSITEPS00396TOPOISOMERASE_I_PROKcoord: 67..81
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 2..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151143contigH-elongata_contig151143:389..1152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151143.3397.1mRNA_H-elongata_contig151143.3397.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig151143 389..1152 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig151143.3397.1 ID=prot_H-elongata_contig151143.3397.1|Name=mRNA_H-elongata_contig151143.3397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
NQGRLYDHACCTVLYEMTVEDGIAVVTSVEPRRVTKARPIPMCTVELQKR
ASRFCHIPSERTMHVAEALYQRGIISYPRTETEKFKREFDIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013826Topo_IA_cen_sub3
IPR013497Topo_IA_cen
IPR000380Topo_IA
IPR023406Topo_IA_AS
IPR023405Topo_IA_core_domain