prot_H-elongata_contig145384.3108.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig145384.3108.1
Unique Nameprot_H-elongata_contig145384.3108.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A6H5KNE5_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 38
            GGFGGGP+QL HCAPMYASVLSLLI+GTPEAY  I R
Sbjct:  130 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 166          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: K8YQG9_NANGC (Protein farnesyltransferase subunit beta (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQG9_NANGC)

HSP 1 Score: 67.0 bits (162), Expect = 4.520e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 61
            GGFGGGP Q+SHCAP YA+VL+LLI+GT EAY+ I+R   Y+W+     L+ +  SG  C++
Sbjct:  119 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWF-----LARKHLSGGFCMH 175          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 38
            GGFGGGP+QL HCAPMYASVLSLLI+GTPEAY  I R
Sbjct:  145 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 181          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 61
            GGFGGGP Q+SHCAP YA+VL+LLI+GT EAY+ I+R   Y+W+     L+ +  SG  C++
Sbjct:  135 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWF-----LARKHLSGGFCMH 191          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A1Y1YQG9_9FUNG (Protein farnesyltransferase subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQG9_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIYLG 63
            GGFGGGP Q+SH AP YA++ +L IIGTP AYE INR   Y+W     LLS++   G   +++G
Sbjct:  121 GGFGGGPSQMSHLAPTYAAINALAIIGTPAAYEIINRETLYQW-----LLSLKQPDGSFIMHVG 179          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.930e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWY----HPS 46
            GGFGGGP+QL+HCAP YA+VL+LL++GT  AY  ++R   YR++    HPS
Sbjct:  128 GGFGGGPQQLAHCAPTYAAVLTLLLLGTEAAYSAVDRSALYRFFTSIKHPS 178          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A1S8VFL6_9FUNG (Protein farnesyltransferase subunit beta n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VFL6_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 8.840e-9
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINRYYRWYHPSSLLSVRACSGCVCIYLG 63
            GG+GGGP Q++H A  YA+V ++ IIGTPEAY+ INR   +   S LL+++   G  C++ G
Sbjct:   34 GGYGGGPGQIAHLATTYAAVNAIAIIGTPEAYQSINRELLY---SFLLAMKQVDGSYCMHHG 92          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A0L0D7W4_THETB (Protein farnesyltransferase subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7W4_THETB)

HSP 1 Score: 58.2 bits (139), Expect = 3.450e-8
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    2 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 61
            GGF GGP QL+H AP YA+V +L I+G+PEAYE I+R     W     LLS++A  G  C++
Sbjct:   68 GGFAGGPGQLAHLAPTYAAVCALSIVGSPEAYEVIDRPALRSW-----LLSLKAECGAFCMH 124          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A8J8WMM8_CHIOP (Protein farnesyltransferase subunit beta n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J8WMM8_CHIOP)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-8
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 38
            KGGFGGGP Q SH AP YA+V +L+IIGT EAY+ INR
Sbjct:  122 KGGFGGGPGQYSHLAPTYAAVNALVIIGTKEAYDAINR 159          
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: UPI001D090C2A (protein farnesyltransferase subunit beta n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D090C2A)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-8
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    1 KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 38
            +GGFGGGP Q+SH AP YA+V +L+IIGT EAY+ INR
Sbjct:  122 EGGFGGGPGQISHLAPTYAAVNALIIIGTKEAYDVINR 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE5_9PHAE3.270e-1283.78Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
K8YQG9_NANGC4.520e-1253.23Protein farnesyltransferase subunit beta (Fragment... [more]
D7FXI8_ECTSI1.060e-1183.78Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
W7TZN2_9STRA2.700e-1153.23Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
A0A1Y1YQG9_9FUNG4.430e-1051.56Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A836CMB6_9STRA2.930e-956.86Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A1S8VFL6_9FUNG8.840e-946.77Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A0L0D7W4_THETB3.450e-850.00Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A8J8WMM8_CHIOP3.530e-871.05Protein farnesyltransferase subunit beta n=1 Tax=C... [more]
UPI001D090C2A4.790e-868.42protein farnesyltransferase subunit beta n=1 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.50.10.20coord: 1..63
e-value: 1.1E-8
score: 36.2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..44
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 2..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145384contigH-elongata_contig145384:167..382 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145384.3108.1mRNA_H-elongata_contig145384.3108.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig145384 167..382 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig145384.3108.1 ID=prot_H-elongata_contig145384.3108.1|Name=mRNA_H-elongata_contig145384.3108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINRYYRWYHPSSLLS
VRACSGCVCIYLGLGEWMGGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008930Terpenoid_cyclase/PrenylTrfase