mRNA_H-elongata_contig145384.3108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145384.3108.1
Unique NamemRNA_H-elongata_contig145384.3108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A6H5KNE5_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.270e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 114
            GGFGGGP+QL HCAPMYASVLSLLI+GTPEAY  I R
Sbjct:  130 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 166
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: K8YQG9_NANGC (Protein farnesyltransferase subunit beta (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQG9_NANGC)

HSP 1 Score: 67.0 bits (162), Expect = 4.520e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 183
            GGFGGGP Q+SHCAP YA+VL+LLI+GT EAY+ I+R   Y+W+     L+ +  SG  C++
Sbjct:  119 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWF-----LARKHLSGGFCMH 175
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 114
            GGFGGGP+QL HCAPMYASVLSLLI+GTPEAY  I R
Sbjct:  145 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 181
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 183
            GGFGGGP Q+SHCAP YA+VL+LLI+GT EAY+ I+R   Y+W+     L+ +  SG  C++
Sbjct:  135 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWF-----LARKHLSGGFCMH 191
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A1Y1YQG9_9FUNG (Protein farnesyltransferase subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQG9_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIYLG 189
            GGFGGGP Q+SH AP YA++ +L IIGTP AYE INR   Y+W     LLS++   G   +++G
Sbjct:  121 GGFGGGPSQMSHLAPTYAAINALAIIGTPAAYEIINRETLYQW-----LLSLKQPDGSFIMHVG 179
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.930e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWY----HPS 138
            GGFGGGP+QL+HCAP YA+VL+LL++GT  AY  ++R   YR++    HPS
Sbjct:  128 GGFGGGPQQLAHCAPTYAAVLTLLLLGTEAAYSAVDRSALYRFFTSIKHPS 178
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A1S8VFL6_9FUNG (Protein farnesyltransferase subunit beta n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VFL6_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 8.840e-9
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINRYYRWYHPSSLLSVRACSGCVCIYLG 189
            GG+GGGP Q++H A  YA+V ++ IIGTPEAY+ INR   +   S LL+++   G  C++ G
Sbjct:   34 GGYGGGPGQIAHLATTYAAVNAIAIIGTPEAYQSINRELLY---SFLLAMKQVDGSYCMHHG 92
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BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A0L0D7W4_THETB (Protein farnesyltransferase subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7W4_THETB)

HSP 1 Score: 58.2 bits (139), Expect = 3.450e-8
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    4 GGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR--YYRWYHPSSLLSVRACSGCVCIY 183
            GGF GGP QL+H AP YA+V +L I+G+PEAYE I+R     W     LLS++A  G  C++
Sbjct:   68 GGFAGGPGQLAHLAPTYAAVCALSIVGSPEAYEVIDRPALRSW-----LLSLKAECGAFCMH 124
[Close]
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: A0A8J8WMM8_CHIOP (Protein farnesyltransferase subunit beta n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J8WMM8_CHIOP)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-8
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 114
            KGGFGGGP Q SH AP YA+V +L+IIGT EAY+ INR
Sbjct:  122 KGGFGGGPGQYSHLAPTYAAVNALVIIGTKEAYDAINR 159
[Close]
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Match: UPI001D090C2A (protein farnesyltransferase subunit beta n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D090C2A)

HSP 1 Score: 57.8 bits (138), Expect = 4.790e-8
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINR 114
            +GGFGGGP Q+SH AP YA+V +L+IIGT EAY+ INR
Sbjct:  122 EGGFGGGPGQISHLAPTYAAVNALIIIGTKEAYDVINR 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145384.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE5_9PHAE3.270e-1283.78Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
K8YQG9_NANGC4.520e-1253.23Protein farnesyltransferase subunit beta (Fragment... [more]
D7FXI8_ECTSI1.060e-1183.78Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
W7TZN2_9STRA2.700e-1153.23Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
A0A1Y1YQG9_9FUNG4.430e-1051.56Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A836CMB6_9STRA2.930e-956.86Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A1S8VFL6_9FUNG8.840e-946.77Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A0L0D7W4_THETB3.450e-850.00Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A8J8WMM8_CHIOP3.530e-871.05Protein farnesyltransferase subunit beta n=1 Tax=C... [more]
UPI001D090C2A4.790e-868.42protein farnesyltransferase subunit beta n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145384contigH-elongata_contig145384:167..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7FXI8
Preferred nameFNTB
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0365@2759
Ec32 ortholog descriptionProtein farnesyltransferase subunit beta
Ec32 orthologEc-28_001820.1
EC2.5.1.58
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.2004216-CDS-H-elongata_contig145384:166..3821622929865.2004216-CDS-H-elongata_contig145384:166..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145384 167..382 -
1691679187.3377893-CDS-H-elongata_contig145384:166..3821691679187.3377893-CDS-H-elongata_contig145384:166..382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145384 167..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145384.3108.1prot_H-elongata_contig145384.3108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145384 167..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145384.3108.1

>prot_H-elongata_contig145384.3108.1 ID=prot_H-elongata_contig145384.3108.1|Name=mRNA_H-elongata_contig145384.3108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
KGGFGGGPKQLSHCAPMYASVLSLLIIGTPEAYEKINRYYRWYHPSSLLS
VRACSGCVCIYLGLGEWMGGM*
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mRNA from alignment at H-elongata_contig145384:167..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145384.3108.1 ID=mRNA_H-elongata_contig145384.3108.1|Name=mRNA_H-elongata_contig145384.3108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig145384:167..382- (Himanthalia elongata Himel1 dioecious)
AAGGGCGGCTTCGGTGGCGGACCCAAGCAGCTTTCGCACTGCGCCCCCAT
GTACGCCTCCGTCCTGTCGCTGCTGATCATCGGAACTCCCGAGGCGTACG
AGAAGATAAACAGGTACTACAGGTGGTACCATCCAAGTTCCTTGCTCTCT
GTCCGGGCGTGTAGTGGTTGTGTCTGTATATATCTGGGTCTGGGTGAGTG
GATGGGTGGGATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig145384:167..382-

>mRNA_H-elongata_contig145384.3108.1 ID=mRNA_H-elongata_contig145384.3108.1|Name=mRNA_H-elongata_contig145384.3108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig145384:167..382- (Himanthalia elongata Himel1 dioecious)
AAGGGCGGCTTCGGTGGCGGACCCAAGCAGCTTTCGCACTGCGCCCCCAT
GTACGCCTCCGTCCTGTCGCTGCTGATCATCGGAACTCCCGAGGCGTACG
AGAAGATAAACAGGTACTACAGGTGGTACCATCCAAGTTCCTTGCTCTCT
GTCCGGGCGTGTAGTGGTTGTGTCTGTATATATCTGGGTCTGGGTGAGTG
GATGGGTGGGATGTAAAAGGGCGGCTTCGGTGGCGGACCCAAGCAGCTTT
CGCACTGCGCCCCCATGTACGCCTCCGTCCTGTCGCTGCTGATCATCGGA
ACTCCCGAGGCGTACGAGAAGATAAACAGGTACTACAGGTGGTACCATCC
AAGTTCCTTGCTCTCTGTCCGGGCGTGTAGTGGTTGTGTCTGTATATATC
TGGGTCTGGGTGAGTGGATGGGTGGGATGTAA
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