prot_H-elongata_contig139731.2765.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139731.2765.1
Unique Nameprot_H-elongata_contig139731.2765.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.220e-38
Identity = 77/146 (52.74%), Postives = 94/146 (64.38%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASLCGV 139
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF  VL  A  RFS D   L         +  ARG  +   +  ++ +W MLY D+A + S+S   L  V
Sbjct:  116 MCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEFAAIRFSEDDVVLRSLVCLEEGKTEARGGEETPLDRGRKAVWGMLYADDAGVVSRSAEGLARV 261          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 5.410e-38
Identity = 75/143 (52.45%), Postives = 91/143 (63.64%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF   L V   RFS D   L         +  A G  +   +  +R +W MLY D+A + S+S   L
Sbjct:   21 MCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRATVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVISRSAEGL 163          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JT43_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT43_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.860e-37
Identity = 77/143 (53.85%), Postives = 94/143 (65.73%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCF DL+KA+DSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFN FF AVL VA  RFS D   L         +  ARG  +   +  +R +W MLY D+A + S+S   L
Sbjct:    1 MCFADLKKAHDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNTFFAAVLEVAVIRFSEDDVVLRSLVCLEEGKAEARGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGL 143          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JCY6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.330e-36
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            M F+DL KAYD VD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF  VL V   RFS D   L         +  A G  +   +  +R +W MLY D+  + S+S A L
Sbjct:    1 MWFVDLNKAYDLVDRDMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDPGVVSRSTAGL 143          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.380e-36
Identity = 76/143 (53.15%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF  VL V   RFS D   L         +  A G  +   +  +R +W MLY D+A + S+S   L
Sbjct:   21 MCFVDLNKAYDSVDREMLWKVLARGGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVQRAVWGMLYADDAGVVSRSAEGL 163          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K767_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K767_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 8.400e-36
Identity = 76/143 (53.15%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF  VL V   RFS D   L         +  A G  +   +  +R +W MLY D+A + S+S   L
Sbjct:  252 MCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAQGL 394          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5KIF0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.920e-35
Identity = 75/139 (53.96%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARV------VARGDLTK-EASKRVLWAMLYTDNARIASQS 132
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR D GE S+ F V QG+RQG V++P LFNIFF  VL V   RFS D   L     +         G+ T  +  +R +W MLY D+A + S+S
Sbjct:  170 MCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRTDDGEPSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDIVLRSLVCLEEGKTEAGGGEKTPLDRVRRAVWGMLYADDAGVVSRS 308          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.820e-35
Identity = 75/143 (52.45%), Postives = 91/143 (63.64%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCF+DL KAYDSVD  +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V  G+RQG V++P LFNIFF  VL V   RFS D   L         +  A G  +   +  +R +W MLY D+A + S+S   L
Sbjct:  154 MCFVDLNKAYDSVDRGMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFLVTPGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGL 296          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K401_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K401_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.390e-35
Identity = 71/147 (48.30%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    2 CFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARVVARGDLT----KEASKRV--------LWAMLYTDNARIASQSQASL 136
            CF+DL KAYDSVD  LLW VL R+G+P K++++IR F  GMRA VR D G+ SE F V QGLRQG  +AP LFN+FF A+L VA   F  D     D  ++  + + T    + A K+         LWAMLY D+A I S+S  SL
Sbjct:   22 CFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHKGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESL 168          
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 5.620e-35
Identity = 74/139 (53.24%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    1 MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARVVAR---GDLTKEASKRVLWAMLYTDNARIASQSQASL 136
            MCFIDLQKAYDSVD  LLWKVLAR GIP ++I++IR+F  GMRA VR D GE S+ F V QGLRQG  I+P LFN+FF A L V   RFS D+  + D   +      G    +  +R +W MLY D+A I S+S   L
Sbjct:  135 MCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEVIVARFSKDEVIMRDLVYLKEEEGGGRTLLDRVRRAVWGMLYADDAGIVSKSADGL 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVE1_9PHAE2.220e-3852.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY6_9PHAE5.410e-3852.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JT43_9PHAE9.860e-3753.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCY6_9PHAE1.330e-3651.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBT6_9PHAE2.380e-3653.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K767_9PHAE8.400e-3653.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KIF0_9PHAE1.920e-3553.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBT2_9PHAE3.820e-3552.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K401_9PHAE4.390e-3548.30Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7X5_9PHAE5.620e-3553.24Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..81
e-value: 5.1E-15
score: 55.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..193
score: 9.327
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 4..86
NoneNo IPR availablePANTHERPTHR19446:SF411coord: 4..86
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139731contigH-elongata_contig139731:159..740 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139731.2765.1mRNA_H-elongata_contig139731.2765.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139731 126..1296 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139731.2765.1 ID=prot_H-elongata_contig139731.2765.1|Name=mRNA_H-elongata_contig139731.2765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDS
GEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA
RVVARGDLTKEASKRVLWAMLYTDNARIASQSQASLCGVRPQSVGKEDGD
HAHAPPHHEGRSDCRGGRVAKVQPSRHLRVSWQHHQQRWGRRP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom