mRNA_H-elongata_contig139731.2765.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JVE1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 8.200e-41 Identity = 83/157 (52.87%), Postives = 102/157 (64.97%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASLCGV 450
EL R K +PL+MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF VL A RFS D L + ARG + + ++ +W MLY D+A + S+S L V
Sbjct: 105 ELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEFAAIRFSEDDVVLRSLVCLEEGKTEARGGEETPLDRGRKAVWGMLYADDAGVVSRSAEGLARV 261
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JHY6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY6_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.580e-40 Identity = 81/154 (52.60%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL+MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF L V RFS D L + A G + + +R +W MLY D+A + S+S L
Sbjct: 10 ELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRATVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEALEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVISRSAEGL 163
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 9.540e-39 Identity = 82/154 (53.25%), Postives = 100/154 (64.94%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL+MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF VL V RFS D L + A G + + +R +W MLY D+A + S+S L
Sbjct: 10 ELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARGGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVQRAVWGMLYADDAGVVSRSAEGL 163
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5KIF0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF0_9PHAE) HSP 1 Score: 150 bits (379), Expect = 7.880e-38 Identity = 81/150 (54.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARV------VARGDLTK-EASKRVLWAMLYTDNARIASQS 429
EL R K +PL+MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR D GE S+ F V QG+RQG V++P LFNIFF VL V RFS D L + G+ T + +R +W MLY D+A + S+S
Sbjct: 159 ELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRTDDGEPSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDIVLRSLVCLEEGKTEAGGGEKTPLDRVRRAVWGMLYADDAGVVSRS 308
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K767_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K767_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.200e-37 Identity = 82/154 (53.25%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF VL V RFS D L + A G + + +R +W MLY D+A + S+S L
Sbjct: 241 ELGRRKKIPLLMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAQGL 394
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 151 bits (381), Expect = 1.960e-37 Identity = 81/154 (52.60%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL+MCF+DL KAYDSVD +LWKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V G+RQG V++P LFNIFF VL V RFS D L + A G + + +R +W MLY D+A + S+S L
Sbjct: 143 ELGRRKKIPLYMCFVDLNKAYDSVDRGMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFLVTPGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGL 296
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JFG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG6_9PHAE) HSP 1 Score: 147 bits (371), Expect = 7.660e-37 Identity = 79/154 (51.30%), Postives = 98/154 (63.64%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARG--DLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL+MCF+DL KAYDSVD +LWKVLA GIPAKLI +IRQF DGM+A VR+D GE S+ F V G+RQG V++P LFNIFF VL V RFS D L + A G + + +R +W MLY D+A + S+S L
Sbjct: 10 ELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLASAGIPAKLIEVIRQFHDGMQARVRMDDGELSDWFFVTHGVRQGCVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGL 163
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K401_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K401_9PHAE) HSP 1 Score: 141 bits (356), Expect = 8.490e-37 Identity = 77/159 (48.43%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARVVARGDLT----KEASKRV--------LWAMLYTDNARIASQSQASL 441
ELAR+K +F CF+DL KAYDSVD LLW VL R+G+P K++++IR F GMRA VR D G+ SE F V QGLRQG +AP LFN+FF A+L VA F D D ++ + + T + A K+ LWAMLY D+A I S+S SL
Sbjct: 10 ELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHKGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGRSAGKKTTVVTDAEALWAMLYADDAAIVSRSPESL 168
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE) HSP 1 Score: 148 bits (373), Expect = 8.950e-37 Identity = 79/150 (52.67%), Postives = 98/150 (65.33%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFARVVAR---GDLTKEASKRVLWAMLYTDNARIASQSQASL 441
EL R + +PL+MCFIDLQKAYDSVD LLWKVLAR GIP ++I++IR+F GMRA VR D GE S+ F V QGLRQG I+P LFN+FF A L V RFS D+ + D + G + +R +W MLY D+A I S+S L
Sbjct: 124 ELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEVIVARFSKDEVIMRDLVYLKEEEGGGRTLLDRVRRAVWGMLYADDAGIVSKSADGL 273
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Match: A0A6H5JRX8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX8_9PHAE) HSP 1 Score: 143 bits (361), Expect = 9.750e-37 Identity = 79/154 (51.30%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 1 ELAREKDLPLFMCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSGEASELFAVEQGLRQGFVIAPDLFNIFFVAVLTVAFDRFSIDKAALGDFA-----RVVARGDLTK--EASKRVLWAMLYTDNARIASQSQASL 441
EL R K +PL MCF+DL+KAYDSV + WKVLAR GIPAKLI +IRQF DGMRA VR+D GE S+ F V QG+RQG V++P LFNIFF VL V R S D L + ARG + + +R +W ML D+A + S+S L
Sbjct: 10 ELGRRKKIPLSMCFVDLKKAYDSVKREMPWKVLARAGIPAKLIKVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAKVLEVVVIRLSEDDVVLRSLVCLAEGKTEARGGMETPLDRVRRAVWGMLCADDAGVVSRSAEGL 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139731.2765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139731.2765.1 >prot_H-elongata_contig139731.2765.1 ID=prot_H-elongata_contig139731.2765.1|Name=mRNA_H-elongata_contig139731.2765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp MCFIDLQKAYDSVDHSLLWKVLARYGIPAKLISIIRQFRDGMRAGVRLDSback to top mRNA from alignment at H-elongata_contig139731:126..1296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139731.2765.1 ID=mRNA_H-elongata_contig139731.2765.1|Name=mRNA_H-elongata_contig139731.2765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-elongata_contig139731:126..1296+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139731:126..1296+ >mRNA_H-elongata_contig139731.2765.1 ID=mRNA_H-elongata_contig139731.2765.1|Name=mRNA_H-elongata_contig139731.2765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig139731:126..1296+ (Himanthalia elongata Himel1 dioecious)back to top |