prot_H-elongata_contig139656.2760.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139656.2760.1
Unique Nameprot_H-elongata_contig139656.2760.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length243
Homology
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.920e-44
Identity = 90/235 (38.30%), Postives = 139/235 (59.15%), Query Frame = 0
Query:   21 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 243
            ++VDS A+ +Y D A+   ++  +++   L  P  I TA   +L+G   GVL G VT+D G    V   +++VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK  Q  HPK A + V+ PFQL + D +GPFTP A+GG+K
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFK 653          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.030e-43
Identity = 90/235 (38.30%), Postives = 139/235 (59.15%), Query Frame = 0
Query:   21 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 243
            ++VDS A+ +Y D A+   ++  +++   L  P  I TA   +L+G   GVL G VT+D G    V   +++VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK  Q  HPK A + V+ PFQL + D +GPFTP A+GG+K
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFK 653          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.930e-41
Identity = 87/235 (37.02%), Postives = 135/235 (57.45%), Query Frame = 0
Query:   21 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 243
            ++ DS A+ +Y D A+   ++  +++   L  P  I TA   +L+G   GVL G VT+D G    V   +++VPG+G NLFSV  A+  G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK  Q  HPK A + V+ PFQL + D  GPFT   +GG+K
Sbjct:  325 MLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFK 558          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.350e-39
Identity = 83/235 (35.32%), Postives = 127/235 (54.04%), Query Frame = 0
Query:   21 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYG------AKELAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 243
            ++VDS A+ +Y D  +   L+  +++   L  P  I  A   +L G   G + G VT+D G+   V   +++VPG+G NLFSV  A+ KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G      A +     V +  +WHRR+G ++ +SLD+LRK+    + + G V DC VC +GK  Q  HPK A + V RPFQ      + PFTP  +GG+K
Sbjct:  599 MVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFK 833          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.190e-37
Identity = 85/231 (36.80%), Postives = 127/231 (54.98%), Query Frame = 0
Query:   25 SEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYGAKEL--AMNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 243
            S A+ +Y D  +   L+  +++   L  P  I  A   +L G   G + G VT+D G+   V   +++VPG+G NLFSV  A+ KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G   L  A +A+A    +  +WHRR+GH++ ++LD+LRK    G+ + G V  C VC +GK  Q  HPK A + V RPFQ    D + PFTP A+GG K
Sbjct:  350 SGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQH---DTLSPFTPTALGGSK 577          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 6.270e-35
Identity = 79/254 (31.10%), Postives = 128/254 (50.39%), Query Frame = 0
Query:   19 ATVMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMN------------------------------AVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGY 242
            A++++D+ AS +  DD +I  LK  ++   +LAKP+ +    G  L+G A G++H  V +  G+   V +  LVVPG+GRN+FS    +K G+  + +  NP L     T+PL+ +  ++    +D+       +  A                                A  N   WHR L HL+ +S+++LRK+   G+ F  +++ CD+CA+ K +QLAHP+  N +   P QL Y D MG  TP+A GG+
Sbjct:  134 ASLLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGF 387          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 6.800e-32
Identity = 83/236 (35.17%), Postives = 125/236 (52.97%), Query Frame = 0
Query:   21 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 238
            ++VD+ AS   FD+ +I +    L ++ Q   P+ +  A    L GTA G+LH  V ++ G  + VRI  L+VPG+GRN+FS  + +K+G+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +   WHRRLGHL+A+SLDILRK  GT + +  ++S C VC + K +Q  HPK +  +++RP QL   D MGP  P A
Sbjct:  208 LLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 441          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.400e-31
Identity = 82/234 (35.04%), Postives = 122/234 (52.14%), Query Frame = 0
Query:   23 VDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 238
            V++ AS    D+ +I +    L ++ Q   P+ +  A G  L GTA G+LH  V ++ G  + VRI   +VPG+GRN+FS  + +KKG+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +   WHRRLGHL+A+SLDILRK  GTG+ +  ++S C VC + K +Q  HPK +  +++RP QL     MGP  P A
Sbjct:  175 VNTGASETMLDNRLIPD--GNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPA 406          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5LL42_9PHAE (Peptidase A2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL42_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 7.920e-31
Identity = 83/248 (33.47%), Postives = 129/248 (52.02%), Query Frame = 0
Query:    9 ASQYSVNNNLATVMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY--------------GAKELAMNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 238
            AS ++ ++    ++VD+ AS   FDD +I +    LQ++ Q   P+ +  A  + L GTA GVL+  V ++ G  + VRI  L+VPG+GRN FS  + +KKG+  + +   P L      +PL  +  +     LD++ +                 ++    NAV     +   WHRRLGHL+A+SLDILRK  GTG+    ++S C VC + K +Q  H K +  +++RP Q+   D M P  P A
Sbjct:   26 ASNFAASSTGVGLLVDTGASETMFDDRLIPD--GNLQDYTQRNSPKIVDVAGESQLKGTATGVLNCTVKDNQGQQLRVRIQGLIVPGLGRNSFSPTSLLKKGLRCVVEESTPHLAIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTTSVLPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGMDNRDSLSPCGVCQITKHKQSPHQKQSTRELSRPGQVVVIDNMEPGNPPA 271          
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.240e-30
Identity = 78/225 (34.67%), Postives = 119/225 (52.89%), Query Frame = 0
Query:   32 FDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 238
            FD+ ++ +    L ++ Q    + +  A G+ L GTA G+LH  V ++ G  + VRI  L+VPG+GRN+FS  + +KKG+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +   WHRRLGHL+A+SLDIL K  GT + +  ++S C VC + K +Q  +PK +  +++RP QL   D MGP TP A
Sbjct:    2 FDNCLVPD--GNLHDYTQRNSLKIVDVAGGSQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J842_9PHAE5.920e-4438.30Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE1.030e-4338.30Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE4.930e-4137.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE8.350e-3935.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Q7_9PHAE3.190e-3736.80gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JYD3_9PHAE6.270e-3531.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE6.800e-3235.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMG5_9PHAE2.400e-3135.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL42_9PHAE7.920e-3133.47Peptidase A2 domain-containing protein (Fragment) ... [more]
A0A6H5K9M6_9PHAE1.240e-3034.67gag_pre-integrs domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 159..205
e-value: 5.9E-7
score: 29.2
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 74..235
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 74..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139656contigH-elongata_contig139656:990..1718 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139656.2760.1mRNA_H-elongata_contig139656.2760.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139656 990..1718 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139656.2760.1 ID=prot_H-elongata_contig139656.2760.1|Name=mRNA_H-elongata_contig139656.2760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MGSSSATTASQYSVNNNLATVMVDSEASGHYFDDAIIRNLKHRLQNFVQL
AKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNL
FSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY
GAKELAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDV
CAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
IPR039537Retrotran_Ty1/copia-like