mRNA_H-elongata_contig139656.2760.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 168 bits (425), Expect = 5.920e-44 Identity = 90/235 (38.30%), Postives = 139/235 (59.15%), Query Frame = 1
Query: 61 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 729
++VDS A+ +Y D A+ ++ +++ L P I TA +L+G GVL G VT+D G V +++VPG+G NLFSV A+ G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V +WHRR+GH++ +SLD+LR++ +GI + G V DC C +GK Q HPK A + V+ PFQL + D +GPFTP A+GG+K
Sbjct: 420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFK 653
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.030e-43 Identity = 90/235 (38.30%), Postives = 139/235 (59.15%), Query Frame = 1
Query: 61 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 729
++VDS A+ +Y D A+ ++ +++ L P I TA +L+G GVL G VT+D G V +++VPG+G NLFSV A+ G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V +WHRR+GH++ +SLD+LR++ +GI + G V DC C +GK Q HPK A + V+ PFQL + D +GPFTP A+GG+K
Sbjct: 420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFK 653
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 159 bits (403), Expect = 4.930e-41 Identity = 87/235 (37.02%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 61 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 729
++ DS A+ +Y D A+ ++ +++ L P I TA +L+G GVL G VT+D G V +++VPG+G NLFSV A+ G+ ++F +NPRLE + VP++ + +G + S + L A+ G + LA+ V +WHRR+GH++ +SLD+LR++ +GI + G V DC C +GK Q HPK A + V+ PFQL + D GPFT +GG+K
Sbjct: 325 MLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFK 558
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE) HSP 1 Score: 153 bits (386), Expect = 8.350e-39 Identity = 83/235 (35.32%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 61 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYG------AKELAMNAVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 729
++VDS A+ +Y D + L+ +++ L P I A +L G G + G VT+D G+ V +++VPG+G NLFSV A+ KG+ T+F +NPRLE +V P+++ +YS + L + G A + V + +WHRR+G ++ +SLD+LRK+ + + G V DC VC +GK Q HPK A + V RPFQ + PFTP +GG+K
Sbjct: 599 MVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFK 833
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.190e-37 Identity = 85/231 (36.80%), Postives = 127/231 (54.98%), Query Frame = 1
Query: 73 SEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYGAKEL--AMNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGYK 729
S A+ +Y D + L+ +++ L P I A +L G G + G VT+D G+ V +++VPG+G NLFSV A+ KG+ T+F +NPRLE +V P+++ +YS + L + G L A +A+A + +WHRR+GH++ ++LD+LRK G+ + G V C VC +GK Q HPK A + V RPFQ D + PFTP A+GG K
Sbjct: 350 SGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQH---DTLSPFTPTALGGSK 577
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 142 bits (357), Expect = 6.270e-35 Identity = 79/254 (31.10%), Postives = 128/254 (50.39%), Query Frame = 1
Query: 55 ATVMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMN------------------------------AVANVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGY 726
A++++D+ AS + DD +I LK ++ +LAKP+ + G L+G A G++H V + G+ V + LVVPG+GRN+FS +K G+ + + NP L T+PL+ + ++ +D+ + A A N WHR L HL+ +S+++LRK+ G+ F +++ CD+CA+ K +QLAHP+ N + P QL Y D MG TP+A GG+
Sbjct: 134 ASLLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGF 387
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 132 bits (333), Expect = 6.800e-32 Identity = 83/236 (35.17%), Postives = 125/236 (52.97%), Query Frame = 1
Query: 61 VMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 714
++VD+ AS FD+ +I + L ++ Q P+ + A L GTA G+LH V ++ G + VRI L+VPG+GRN+FS + +K+G+ + + P L +PL + + LD++ + G K L NAV + WHRRLGHL+A+SLDILRK GT + + ++S C VC + K +Q HPK + +++RP QL D MGP P A
Sbjct: 208 LLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 441
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.400e-31 Identity = 82/234 (35.04%), Postives = 122/234 (52.14%), Query Frame = 1
Query: 67 VDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 714
V++ AS D+ +I + L ++ Q P+ + A G L GTA G+LH V ++ G + VRI +VPG+GRN+FS + +KKG+ + + P L +PL + + LD++ + G K L NAV + WHRRLGHL+A+SLDILRK GTG+ + ++S C VC + K +Q HPK + +++RP QL MGP P A
Sbjct: 175 VNTGASETMLDNRLIPD--GNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPA 406
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5LL42_9PHAE (Peptidase A2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL42_9PHAE) HSP 1 Score: 125 bits (313), Expect = 7.920e-31 Identity = 83/248 (33.47%), Postives = 129/248 (52.02%), Query Frame = 1
Query: 25 ASQYSVNNNLATVMVDSEASGHYFDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY--------------GAKELAMNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 714
AS ++ ++ ++VD+ AS FDD +I + LQ++ Q P+ + A + L GTA GVL+ V ++ G + VRI L+VPG+GRN FS + +KKG+ + + P L +PL + + LD++ + ++ NAV + WHRRLGHL+A+SLDILRK GTG+ ++S C VC + K +Q H K + +++RP Q+ D M P P A
Sbjct: 26 ASNFAASSTGVGLLVDTGASETMFDDRLIPD--GNLQDYTQRNSPKIVDVAGESQLKGTATGVLNCTVKDNQGQQLRVRIQGLIVPGLGRNSFSPTSLLKKGLRCVVEESTPHLAIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTTSVLPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGMDNRDSLSPCGVCQITKHKQSPHQKQSTRELSRPGQVVVIDNMEPGNPPA 271
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.240e-30 Identity = 78/225 (34.67%), Postives = 119/225 (52.89%), Query Frame = 1
Query: 94 FDDAIIRNLKHRLQNFVQLAKPRKIFTAEGALLNGTAEGVLHGLVTNDYGDHIIVRIDILVVPGIGRNLFSVITAVKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NVQVWHRRLGHLHAQSLDILRKRYGTGITFEGAVSDCDVCAVGKDQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 714
FD+ ++ + L ++ Q + + A G+ L GTA G+LH V ++ G + VRI L+VPG+GRN+FS + +KKG+ + + P L +PL + + LD++ + G K L NAV + WHRRLGHL+A+SLDIL K GT + + ++S C VC + K +Q +PK + +++RP QL D MGP TP A
Sbjct: 2 FDNCLVPD--GNLHDYTQRNSLKIVDVAGGSQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139656.2760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139656.2760.1 >prot_H-elongata_contig139656.2760.1 ID=prot_H-elongata_contig139656.2760.1|Name=mRNA_H-elongata_contig139656.2760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MGSSSATTASQYSVNNNLATVMVDSEASGHYFDDAIIRNLKHRLQNFVQLback to top mRNA from alignment at H-elongata_contig139656:990..1718+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139656.2760.1 ID=mRNA_H-elongata_contig139656.2760.1|Name=mRNA_H-elongata_contig139656.2760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at H-elongata_contig139656:990..1718+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139656:990..1718+ >mRNA_H-elongata_contig139656.2760.1 ID=mRNA_H-elongata_contig139656.2760.1|Name=mRNA_H-elongata_contig139656.2760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig139656:990..1718+ (Himanthalia elongata Himel1 dioecious)back to top |