prot_H-elongata_contig13929.2741.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13929.2741.1
Unique Nameprot_H-elongata_contig13929.2741.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length371
Homology
BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 6.570e-84
Identity = 181/406 (44.58%), Postives = 216/406 (53.20%), Query Frame = 0
Query:    1 PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLFLSSTDGVIFKNASLRCSSSGHGR------DSSWREIVLQLDEPCPTINMSILSNNFSLTNSGND-----TSITFSGGYSSDWDMLIESRVLSDGV---------GRNSSGTVLLSALPTLVTDLSAAANSLVAVTDLDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAEIDLDCHRXXP-----------------------CPFGTREIQGXXXXXXXXXXXXXECTAGEYESRDCHMRGGDXXXXXXXXCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVLEDLRVSTREGRRHWGYTQDYWGQGRAARDAVNPRDELIEVEFREGARSVFDDPRYVGQEGPTG 363
            P     VVG  G   +L   E    + L PS              +SL CSS+  GR       +S REIVL LDEPC  +  ++ + N +   S  D     T+  F GGY SDW ML+ + VL +             N++ +++L+A  + VTDLSAAAN LVAV DL++S PDCQPCGNGT+RSEPCT+V+DAVC  C   C GGD F+L+PCTAE  LDCH   P                       C FGTREI               EC   EYESR+C   G  XXXXXXXX                V  WQ ENCCET  GE++PC  + LE+LRVS   GR  WG  Q   G G  ARD V PRD LIEVEFR GA++VFDDPRYVGQEGPTG
Sbjct:  107 PVYGTQVVGHQGAS-VLELVEDTTSTWLSPSNA------------SSLLCSSAELGRRQGSSNSASRREIVLHLDEPC-AVEAAVTTYNATNGTSPQDEANTTTAEAFVGGYPSDWSMLVAAGVLLEDXXXXXXXIRSATNNNVSLVLNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEPCTEVYDAVCATCAETCAGGDHFVLSPCTAETGLDCHPILPGFLRPDTRPPHDPRHATMQGCTPCAFGTREIGECQQASDRVCEACTECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETAVGEKIPCPDVALENLRVSAATGRWQWGRGQPAGG-GDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTG 497          
BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Match: A0A7S2FHK5_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHK5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.320e-6
Identity = 92/341 (26.98%), Postives = 143/341 (41.94%), Query Frame = 0
Query:    1 PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLF----------LSSTDGVIFKNASLRCSSSGHGRDSSWREIVLQLDEPCPTINMSILSNNFSLTNSGNDTSITFSGGYSSDWDMLIESRVLSDGVGRNSSGTVLLSALPTLVTDLSAAANSLVAVTDLDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAEIDLDCHRXXPCPFGTREIQGXXXXXXXXXXXXXECTAGEYESRDCHMRGGDXXXXXXXXCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVLEDLRVSTREGRRHW----------GYTQDYW 321
            P+L+RF +    +++  FF E V  S+ +P+ +           L +T  VI    +L  S++ +GRD  + E+++ L   CP    +    +++   +G D      GG  + + +++ S  +SD               P  V  +  +    ++ + L Q+ P C PC  G+++SE CT V+D VC                             X     T    G  XXXXXXXXXXX                  XXXXXXX    + ++   C   P  + W+L+NC    +G +V    + LEDLR+ TR+GRRHW          GY Q  W
Sbjct:  648 PSLERFTIEPNEKKVYFFFDEAVKISSWDPAAVTFQNIEYFQPGLDNTSAVI----TLTTSTAAYGRD--YTEVIVDLAPDCPEDEDAKGGCDWNRLRTGIDVE----GGTETVY-IIMASNAISDNADP-----------PNYVVAIENSERRRLSESALVQASPYCGPCEAGSYQSEECTSVYDQVCANXXXXXXXXXXXXXXXXXXXXXXXXXTVXEYXTFTNVAXGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSNDAHKLG--CEGSP--VWWRLQNCWFDKDGNKVQRNLVDLEDLRIDTRQGRRHWVWDVAIPEVYGYAQGDW 962          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW6_ECTSI6.570e-8444.58TNFR-Cys domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2FHK5_9STRA7.320e-626.98Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001368TNFR/NGFR cysteine-rich regionPFAMPF00020TNFR_c6coord: 205..229
e-value: 9.2E-5
score: 22.8
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 160..205
score: 9.937
IPR001368TNFR/NGFR cysteine-rich regionPROSITEPS50050TNFR_NGFR_2coord: 210..254
score: 8.61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13929contigH-elongata_contig13929:5626..8143 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13929.2741.1mRNA_H-elongata_contig13929.2741.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13929 5626..8143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13929.2741.1 ID=prot_H-elongata_contig13929.2741.1|Name=mRNA_H-elongata_contig13929.2741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLFLSSTDGVIFKNASLRC
SSSGHGRDSSWREIVLQLDEPCPTINMSILSNNFSLTNSGNDTSITFSGG
YSSDWDMLIESRVLSDGVGRNSSGTVLLSALPTLVTDLSAAANSLVAVTD
LDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAE
IDLDCHRCTPCPFGTREIQGCEDTLDRVCEPCTECTAGEYESRDCHMRGG
DRICETCLRCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVL
EDLRVSTREGRRHWGYTQDYWGQGRAARDAVNPRDELIEVEFREGARSVF
DDPRYVGQEGPTGGADDDSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001368TNFR/NGFR_Cys_rich_reg