mRNA_H-elongata_contig13929.2741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13929.2741.1
Unique NamemRNA_H-elongata_contig13929.2741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 6.570e-84
Identity = 181/406 (44.58%), Postives = 216/406 (53.20%), Query Frame = 1 
Query:    1 PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLFLSSTDGVIFKNASLRCSSSGHGR------DSSWREIVLQLDEPCPTINMSILSNNFSLTNSGND-----TSITFSGGYSSDWDMLIESRVLSDGV---------GRNSSGTVLLSALPTLVTDLSAAANSLVAVTDLDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAEIDLDCHRXXP-----------------------CPFGTREIQGXXXXXXXXXXXXXECTAGEYESRDCHMRGGDXXXXXXXXCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVLEDLRVSTREGRRHWGYTQDYWGQGRAARDAVNPRDELIEVEFREGARSVFDDPRYVGQEGPTG 1089
            P     VVG  G   +L   E    + L PS              +SL CSS+  GR       +S REIVL LDEPC  +  ++ + N +   S  D     T+  F GGY SDW ML+ + VL +             N++ +++L+A  + VTDLSAAAN LVAV DL++S PDCQPCGNGT+RSEPCT+V+DAVC  C   C GGD F+L+PCTAE  LDCH   P                       C FGTREI               EC   EYESR+C   G  XXXXXXXX                V  WQ ENCCET  GE++PC  + LE+LRVS   GR  WG  Q   G G  ARD V PRD LIEVEFR GA++VFDDPRYVGQEGPTG
Sbjct:  107 PVYGTQVVGHQGAS-VLELVEDTTSTWLSPSNA------------SSLLCSSAELGRRQGSSNSASRREIVLHLDEPC-AVEAAVTTYNATNGTSPQDEANTTTAEAFVGGYPSDWSMLVAAGVLLEDXXXXXXXIRSATNNNVSLVLNATSSFVTDLSAAANPLVAVVDLEESFPDCQPCGNGTYRSEPCTEVYDAVCATCAETCAGGDHFVLSPCTAETGLDCHPILPGFLRPDTRPPHDPRHATMQGCTPCAFGTREIGECQQASDRVCEACTECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETAVGEKIPCPDVALENLRVSAATGRWQWGRGQPAGG-GDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPTG 497
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BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Match: A0A7S2FHK5_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHK5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.320e-6
Identity = 92/341 (26.98%), Postives = 143/341 (41.94%), Query Frame = 1 
Query:    1 PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLF----------LSSTDGVIFKNASLRCSSSGHGRDSSWREIVLQLDEPCPTINMSILSNNFSLTNSGNDTSITFSGGYSSDWDMLIESRVLSDGVGRNSSGTVLLSALPTLVTDLSAAANSLVAVTDLDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAEIDLDCHRXXPCPFGTREIQGXXXXXXXXXXXXXECTAGEYESRDCHMRGGDXXXXXXXXCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVLEDLRVSTREGRRHW----------GYTQDYW 963
            P+L+RF +    +++  FF E V  S+ +P+ +           L +T  VI    +L  S++ +GRD  + E+++ L   CP    +    +++   +G D      GG  + + +++ S  +SD               P  V  +  +    ++ + L Q+ P C PC  G+++SE CT V+D VC                             X     T    G  XXXXXXXXXXX                  XXXXXXX    + ++   C   P  + W+L+NC    +G +V    + LEDLR+ TR+GRRHW          GY Q  W
Sbjct:  648 PSLERFTIEPNEKKVYFFFDEAVKISSWDPAAVTFQNIEYFQPGLDNTSAVI----TLTTSTAAYGRD--YTEVIVDLAPDCPEDEDAKGGCDWNRLRTGIDVE----GGTETVY-IIMASNAISDNADP-----------PNYVVAIENSERRRLSESALVQASPYCGPCEAGSYQSEECTSVYDQVCANXXXXXXXXXXXXXXXXXXXXXXXXXTVXEYXTFTNVAXGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSNDAHKLG--CEGSP--VWWRLQNCWFDKDGNKVQRNLVDLEDLRIDTRQGRRHWVWDVAIPEVYGYAQGDW 962
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13929.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW6_ECTSI6.570e-8444.58TNFR-Cys domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2FHK5_9STRA7.320e-626.98Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13929contigH-elongata_contig13929:5626..8143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue7.1e-73
Seed eggNOG ortholog2880.D8LAW6
EggNOG OGs2CZBK@1,2S9J3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_006180.1
Exons5
Model size1113
Cds size1113
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13929.2741.1prot_H-elongata_contig13929.2741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13929 5626..8143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.0885918-CDS-H-elongata_contig13929:5625..57961622929827.0885918-CDS-H-elongata_contig13929:5625..5796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 5626..5796 -
1691679174.3225486-CDS-H-elongata_contig13929:5625..57961691679174.3225486-CDS-H-elongata_contig13929:5625..5796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 5626..5796 -
1622929827.1001515-CDS-H-elongata_contig13929:6490..66561622929827.1001515-CDS-H-elongata_contig13929:6490..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 6491..6656 -
1691679174.3328218-CDS-H-elongata_contig13929:6490..66561691679174.3328218-CDS-H-elongata_contig13929:6490..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 6491..6656 -
1622929827.1101923-CDS-H-elongata_contig13929:7067..72241622929827.1101923-CDS-H-elongata_contig13929:7067..7224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7068..7224 -
1691679174.3434951-CDS-H-elongata_contig13929:7067..72241691679174.3434951-CDS-H-elongata_contig13929:7067..7224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7068..7224 -
1622929827.121214-CDS-H-elongata_contig13929:7339..74891622929827.121214-CDS-H-elongata_contig13929:7339..7489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7340..7489 -
1691679174.3539684-CDS-H-elongata_contig13929:7339..74891691679174.3539684-CDS-H-elongata_contig13929:7339..7489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7340..7489 -
1622929827.134221-CDS-H-elongata_contig13929:7674..81431622929827.134221-CDS-H-elongata_contig13929:7674..8143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7675..8143 -
1691679174.364703-CDS-H-elongata_contig13929:7674..81431691679174.364703-CDS-H-elongata_contig13929:7674..8143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13929 7675..8143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13929.2741.1

>prot_H-elongata_contig13929.2741.1 ID=prot_H-elongata_contig13929.2741.1|Name=mRNA_H-elongata_contig13929.2741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=371bp
PTLDRFVVGLTGRQLILFFSEGVAFSALEPSGLFLSSTDGVIFKNASLRC
SSSGHGRDSSWREIVLQLDEPCPTINMSILSNNFSLTNSGNDTSITFSGG
YSSDWDMLIESRVLSDGVGRNSSGTVLLSALPTLVTDLSAAANSLVAVTD
LDQSVPDCQPCGNGTFRSEPCTQVFDAVCTACTVDCPGGDMFILAPCTAE
IDLDCHRCTPCPFGTREIQGCEDTLDRVCEPCTECTAGEYESRDCHMRGG
DRICETCLRCFMSPEVAEACRNFPFVLPWQLENCCETVEGERVPCARMVL
EDLRVSTREGRRHWGYTQDYWGQGRAARDAVNPRDELIEVEFREGARSVF
DDPRYVGQEGPTGGADDDSP*
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mRNA from alignment at H-elongata_contig13929:5626..8143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13929.2741.1 ID=mRNA_H-elongata_contig13929.2741.1|Name=mRNA_H-elongata_contig13929.2741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2518bp|location=Sequence derived from alignment at H-elongata_contig13929:5626..8143- (Himanthalia elongata Himel1 dioecious)
CCGACGCTCGATCGATTCGTCGTAGGGTTGACAGGACGTCAGCTCATCTT
GTTCTTCTCCGAAGGGGTTGCCTTCTCAGCCCTCGAGCCATCGGGGCTCT
TCCTGTCCAGCACTGATGGAGTAATCTTCAAAAATGCCTCTTTGAGGTGT
TCCTCCTCGGGGCACGGCCGAGATAGCAGTTGGCGAGAGATTGTCCTGCA
ACTCGATGAGCCATGTCCGACAATTAACATGTCGATACTATCAAACAACT
TCTCTCTCACAAATTCGGGGAACGATACATCGATCACCTTTTCCGGAGGA
TACTCCAGCGATTGGGATATGCTCATCGAGTCGAGGGTGCTATCGGATGG
GGTAGGCCGAAACAGTTCGGGTACAGTGCTACTGAGCGCCTTACCCACCT
TGGTGACAGATTTGTCAGCCGCTGCTAACAGCCTGGTTGCTGTGACAGAT
CTAGACCAGTCGGTCCCCGGTGAGATAAAGAGTCGGAAACCGACGCGGCT
TTCTTCTATTTTGCCGCCGATAGCGCCCAAAGTGAGCAAATCTCGTCCGA
ACGGGACAAAAACATTATCAGCATTCTCTCATGATGTCTCTAACTCCGCT
GCCCTGGATACAATCATACGTGTCCGGTATCTACACTTGACGTTATGGGA
AAAGACTGCCAACCTTGTGGGAATGGCACTTTTCGGTCGGAGCCGTGTAC
GCAGGTTTTCGATGCGGTTTGCACGGCGTGCACGGTGGATTGCCCAGGCG
GGGACATGTTCATCCTAGCCCCGTGTACGGCGGAAATCGACCTGGACTGC
CATCGTGAGCCTCTCTGGCTGACCGAGCCATGAGCGTGAGAAGTACGAAC
CCGCTTCGCAGCGAGCTCCTTAATCGATTGGTCGACGCCTAACAACCGTG
GCGTCGTTTTTTCATGCAGGCTGCACGCCGTGTCCCTTCGGAACCCGAGA
AATACAGGGCTGTGAGGACACGTTGGACCGCGTTTGTGAACCTTGCACAG
AGTGCACGGCGGGGGAGTACGAAAGCAGAGATTGTCACATGAGGGGAGGC
GATCGAATATGCGAAACGTGCTTGAGGTCAGGTGCTCACAAAACGAAAAA
GAGGAGACAAAAAAAGGATCCGAGTGTAGTTTGACCTTTCGTCCAACTGT
CCAGCTGTCCGACTGTTCTACTACCCGTCTCCGGGCTGGCATGACATGAA
CCCCGCCACGGCACCCCCCCCCGGCATTGGGTGGGCAACGGTCATCCCAA
CGTCAAAAACAAAACATTCAACGATAGCAACGGGAGATAAACACCTCTGC
CCTGCATATATATATATATATATATCTCTCGTTGGGAAACCCGTGTTCAC
ACCCTTCGTTCGGGCTGCTGTTAAAAACGAACGCTCCCGATCCTAATAGT
TTGGGGAGGAGCGTTATCCTTCTTCCCCCCCCCATCCCTTCTTCTCAATT
AATCCCCGCACTAATATTGTTTGGAACACACCTGAAGGTGCTTCATGTCG
CCCGAGGTCGCCGAAGCATGCAGAAACTTCCCGTTTGTTTTGCCGTGGCA
ACTGGAGAACTGCTGCGAGACGGTCGAGGGGGAGAGGGTCCCTTGCGCGA
GGATGGTGCTCGAAGATCTGAGGGTGTCCACGAGGGAAGGGCGACGGCAC
TGGGTTTTCGATCCCTCCATCCCGCCGGTGAGCGATAGATCAATCTCAGT
CGCGCTACTGCGACAAGCTTCGTATGCGTCGCCGATATTTTCGTCAGCGT
TCGACAAACAAAGCAATCATCAGCAAGGAGGGGGAAGCTTTTGAACGGAC
GCGAGTTCCTAAAGTAACAGCAGATACGTTTATTATGCTGTGAAGAACGT
TTCTTCCGTATGAACATCCATTTCCCGGCTACGGTCCGGGATAGCGTTCG
GTGACGTTCACGTCTTCGTGTCAATGCACACAATAGACAATCTTTGTTTC
GAAGCGTTTTATTGAGTGGCACATGAAGAGGGTGTTGGATATAGTGAAGC
TCGTACTCTAGTCGTACCTCTGGCGTGGGAGGACCATGTACAGTAGGTGA
GTGTAGTCTAGACAGGATCGTTAAACTAGAGGGCAGAAATAGTATTCGTG
GATCTTCGGTATCCTCATATCGATCGTTCCTGGACATGGTGCCCGACAAA
GGCGTCGGCGAACGAGGCACAAATATGCATGCGCGGCGCCAAATACTTCG
AGGTGACCATGGGAAACCACCTCATCCCGCACACCCCACAAGTTATTCAT
CCGTGTCGTTCATGAGTGTGAGGATTTTATCCCACCGTTCGTGGCGTGTT
TTTCCGACCACCACGCTTGTTCCCACCCGTCGCTTGTCAAGGTTGAGGGT
TATACGCAGGACTACTGGGGTCAGGGTCGCGCCGCTCGTGATGCCGTGAA
CCCTCGCGACGAGCTTATCGAGGTCGAGTTCCGAGAGGGCGCTCGGAGCG
TGTTCGACGACCCACGCTATGTGGGACAGGAGGGACCCACCGGTGGAGCT
GACGATGACTCTCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13929:5626..8143-

>mRNA_H-elongata_contig13929.2741.1 ID=mRNA_H-elongata_contig13929.2741.1|Name=mRNA_H-elongata_contig13929.2741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2226bp|location=Sequence derived from alignment at H-elongata_contig13929:5626..8143- (Himanthalia elongata Himel1 dioecious)
CCGACGCTCGATCGATTCGTCGTAGGGTTGACAGGACGTCAGCTCATCTT
GTTCTTCTCCGAAGGGGTTGCCTTCTCAGCCCTCGAGCCATCGGGGCTCT
TCCTGTCCAGCACTGATGGAGTAATCTTCAAAAATGCCTCTTTGAGGTGT
TCCTCCTCGGGGCACGGCCGAGATAGCAGTTGGCGAGAGATTGTCCTGCA
ACTCGATGAGCCATGTCCGACAATTAACATGTCGATACTATCAAACAACT
TCTCTCTCACAAATTCGGGGAACGATACATCGATCACCTTTTCCGGAGGA
TACTCCAGCGATTGGGATATGCTCATCGAGTCGAGGGTGCTATCGGATGG
GGTAGGCCGAAACAGTTCGGGTACAGTGCTACTGAGCGCCTTACCCACCT
TGGTGACAGATTTGTCAGCCGCTGCTAACAGCCTGGTTGCTGTGACAGAT
CTAGACCAGTCGGTCCCCGCCGACGCTCGATCGATTCGTCGTAGGGTTGA
CAGGACGTCAGCTCATCTTGTTCTTCTCCGAAGGGGTTGCCTTCTCAGCC
CTCGAGCCATCGGGGCTCTTCCTGTCCAGCACTGATGGAGTAATCTTCAA
AAATGCCTCTTTGAGGTGTTCCTCCTCGGGGCACGGCCGAGATAGCAGTT
GGCGAGAGATTGTCCTGCAACTCGATGAGCCATGTCCGACAATTAACATG
TCGATACTATCAAACAACTTCTCTCTCACAAATTCGGGGAACGATACATC
GATCACCTTTTCCGGAGGATACTCCAGCGATTGGGATATGCTCATCGAGT
CGAGGGTGCTATCGGATGGGGTAGGCCGAAACAGTTCGGGTACAGTGCTA
CTGAGCGCCTTACCCACCTTGGTGACAGATTTGTCAGCCGCTGCTAACAG
CCTGGTTGCTGTGACAGATCTAGACCAGTCGGTCCCCGACTGCCAACCTT
GTGGGAATGGCACTTTTCGGTCGGAGCCGTGTACGCAGGTTTTCGATGCG
GTTTGCACGGCGTGCACGGTGGATTGCCCAGGCGGGGACATGTTCATCCT
AGCCCCGTGTACGGCGGAAATCGACCTGGACTGCCATCACTGCCAACCTT
GTGGGAATGGCACTTTTCGGTCGGAGCCGTGTACGCAGGTTTTCGATGCG
GTTTGCACGGCGTGCACGGTGGATTGCCCAGGCGGGGACATGTTCATCCT
AGCCCCGTGTACGGCGGAAATCGACCTGGACTGCCATCGCTGCACGCCGT
GTCCCTTCGGAACCCGAGAAATACAGGGCTGTGAGGACACGTTGGACCGC
GTTTGTGAACCTTGCACAGAGTGCACGGCGGGGGAGTACGAAAGCAGAGA
TTGTCACATGAGGGGAGGCGATCGAATATGCGAAACGTGCTTGAGGCTGC
ACGCCGTGTCCCTTCGGAACCCGAGAAATACAGGGCTGTGAGGACACGTT
GGACCGCGTTTGTGAACCTTGCACAGAGTGCACGGCGGGGGAGTACGAAA
GCAGAGATTGTCACATGAGGGGAGGCGATCGAATATGCGAAACGTGCTTG
AGGTGCTTCATGTCGCCCGAGGTCGCCGAAGCATGCAGAAACTTCCCGTT
TGTTTTGCCGTGGCAACTGGAGAACTGCTGCGAGACGGTCGAGGGGGAGA
GGGTCCCTTGCGCGAGGATGGTGCTCGAAGATCTGAGGGTGTCCACGAGG
GAAGGGCGACGGCACTGGGTGCTTCATGTCGCCCGAGGTCGCCGAAGCAT
GCAGAAACTTCCCGTTTGTTTTGCCGTGGCAACTGGAGAACTGCTGCGAG
ACGGTCGAGGGGGAGAGGGTCCCTTGCGCGAGGATGGTGCTCGAAGATCT
GAGGGTGTCCACGAGGGAAGGGCGACGGCACTGGGGTTATACGCAGGACT
ACTGGGGTCAGGGTCGCGCCGCTCGTGATGCCGTGAACCCTCGCGACGAG
CTTATCGAGGTCGAGTTCCGAGAGGGCGCTCGGAGCGTGTTCGACGACCC
ACGCTATGTGGGACAGGAGGGACCCACCGGTGGAGCTGACGATGACTCTC
CTTGAGGTTATACGCAGGACTACTGGGGTCAGGGTCGCGCCGCTCGTGAT
GCCGTGAACCCTCGCGACGAGCTTATCGAGGTCGAGTTCCGAGAGGGCGC
TCGGAGCGTGTTCGACGACCCACGCTATGTGGGACAGGAGGGACCCACCG
GTGGAGCTGACGATGACTCTCCTTGA
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