prot_H-elongata_contig139065.2717.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139065.2717.1
Unique Nameprot_H-elongata_contig139065.2717.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length90
Homology
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BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.450e-23
Identity = 57/101 (56.44%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:    1 MLYEQGVVEGDEDLLEA-------GDYDMRWPLRPL--GR--GFKLELHNLTESTALATVRIALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR 90
            MLYE GVV+ D  LLE            + WP  PL  GR  G  LELH+LT+  AL TV++ALLDV R+PL R YWSG K  RIITGMGNNSKD EA+I+
Sbjct:  154 MLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIK 254
[Close]
BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.070e-14
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0 
Query:   34 KLELHNLTESTALATVRIALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR 90
            +L+LHN T STALA VR+ LLD+ARKP TR +   ++ L IITGMGNNSKDGEAVI+
Sbjct:  335 ELDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIK 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J1_ECTSI4.450e-2356.44Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G4I1_ECTSI2.070e-1466.67Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.110coord: 28..90
e-value: 4.4E-5
score: 25.3
IPR002625Smr domainPROSITEPS50828SMRcoord: 35..90
score: 13.177
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 34..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139065contigH-elongata_contig139065:861..1444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139065.2717.1mRNA_H-elongata_contig139065.2717.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139065 834..1444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139065.2717.1 ID=prot_H-elongata_contig139065.2717.1|Name=mRNA_H-elongata_contig139065.2717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MLYEQGVVEGDEDLLEAGDYDMRWPLRPLGRGFKLELHNLTESTALATVR
IALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002625Smr_dom
IPR036063Smr_dom_sf