mRNA_H-elongata_contig139065.2717.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139065.2717.1
Unique NamemRNA_H-elongata_contig139065.2717.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.840e-25
Identity = 61/110 (55.45%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    1 RRGLVEVATMLYEQGVVEGDEDLLEA-------GDYDMRWPLRPL--GR--GFKLELHNLTESTALATVRIALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR 297
            ++G  EV+TMLYE GVV+ D  LLE            + WP  PL  GR  G  LELH+LT+  AL TV++ALLDV R+PL R YWSG K  RIITGMGNNSKD EA+I+
Sbjct:  145 KQGYKEVSTMLYELGVVDADRALLETEGNXXXXXXXXVEWPKWPLKVGRTGGAILELHDLTQGIALETVQVALLDVIRRPLRRPYWSGDKRWRIITGMGNNSKDREAIIK 254
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BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Match: D7G4I1_ECTSI (Predicted mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.000e-15
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 RRGLVEVATMLYEQGVVEGDEDLLEAGDYDMRWPLRPLGRGFKLELHNLTESTALATVRIALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR 297
            + G  E+ATM++E  + +  E+L      +             L+LHN T STALA VR+ LLD+ARKP TR +   ++ L IITGMGNNSKDGEAVI+
Sbjct:  306 KTGHPEMATMIFEDALGDKIEELNSFAPPE-------------LDLHNHTVSTALAAVRVVLLDMARKPATRTFHDPAQELLIITGMGNNSKDGEAVIK 391
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139065.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J1_ECTSI2.840e-2555.45Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G4I1_ECTSI6.000e-1546.46Predicted mitochondrial protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139065contigH-elongata_contig139065:834..1444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmr protein/MutS2 C-terminal
Ec32 orthologEc-07_000430.1
Exons2
Model size297
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139065.2717.1prot_H-elongata_contig139065.2717.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139065 861..1444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.811873-UTR-H-elongata_contig139065:833..8601622929824.811873-UTR-H-elongata_contig139065:833..860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139065 834..860 +
1691679173.6184783-UTR-H-elongata_contig139065:833..8601691679173.6184783-UTR-H-elongata_contig139065:833..860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139065 834..860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.828352-CDS-H-elongata_contig139065:860..9971622929824.828352-CDS-H-elongata_contig139065:860..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139065 861..997 +
1691679173.6285698-CDS-H-elongata_contig139065:860..9971691679173.6285698-CDS-H-elongata_contig139065:860..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139065 861..997 +
1622929824.8477354-CDS-H-elongata_contig139065:1311..14441622929824.8477354-CDS-H-elongata_contig139065:1311..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139065 1312..1444 +
1691679173.6381118-CDS-H-elongata_contig139065:1311..14441691679173.6381118-CDS-H-elongata_contig139065:1311..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139065 1312..1444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139065.2717.1

>prot_H-elongata_contig139065.2717.1 ID=prot_H-elongata_contig139065.2717.1|Name=mRNA_H-elongata_contig139065.2717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MLYEQGVVEGDEDLLEAGDYDMRWPLRPLGRGFKLELHNLTESTALATVR
IALLDVARKPLTRLYWSGSKPLRIITGMGNNSKDGEAVIR
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mRNA from alignment at H-elongata_contig139065:834..1444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139065.2717.1 ID=mRNA_H-elongata_contig139065.2717.1|Name=mRNA_H-elongata_contig139065.2717.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=611bp|location=Sequence derived from alignment at H-elongata_contig139065:834..1444+ (Himanthalia elongata Himel1 dioecious)
CGACGCGGCTTGGTAGAGGTGGCGACGATGCTGTACGAGCAGGGGGTGGT
AGAGGGGGACGAGGATCTCCTGGAAGCGGGCGATTACGACATGCGCTGGC
CGTTGCGCCCGTTGGGGAGGGGCTTCAAGCTCGAGCTTCACAACCTTACC
GAGAGCACTGCCTTGTGAGATGGTTACTGGGCTGTACTATACTGTAGTCT
AGTTATCTACGACTCACCGTTCTCATTCTCTCTGCCTGGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTTATTTTTTTTATTTATTGGGTGT
ATTTTTGTAGTAGTGTATGAGAAATAAAGGGGGTAGTAGGGGGAAGGGGC
CCAGGTGTTAAAAAGTTATGAGAGCCGCCGAGATTTTCGGGTAATGTGGA
GTCAGCTGCGGACGTGTTCTCTCTAAAGCCTTGTACTCTTGTGTCCGTGT
GTGGTGACCTGTAACGATAATCGGCCAGGGCGACGGTGAGAATCGCCCTC
CTCGATGTGGCGCGGAAGCCTTTGACGAGGCTGTACTGGAGCGGGTCGAA
GCCCCTCCGGATCATCACCGGCATGGGGAACAACAGCAAGGACGGGGAGG
CTGTCATCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig139065:834..1444+

>mRNA_H-elongata_contig139065.2717.1 ID=mRNA_H-elongata_contig139065.2717.1|Name=mRNA_H-elongata_contig139065.2717.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig139065:834..1444+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTACGAGCAGGGGGTGGTAGAGGGGGACGAGGATCTCCTGGAAGC
GGGCGATTACGACATGCGCTGGCCGTTGCGCCCGTTGGGGAGGGGCTTCA
AGCTCGAGCTTCACAACCTTACCGAGAGCACTGCCTTATGCTGTACGAGC
AGGGGGTGGTAGAGGGGGACGAGGATCTCCTGGAAGCGGGCGATTACGAC
ATGCGCTGGCCGTTGCGCCCGTTGGGGAGGGGCTTCAAGCTCGAGCTTCA
CAACCTTACCGAGAGCACTGCCTTGGCGACGGTGAGAATCGCCCTCCTCG
ATGTGGCGCGGAAGCCTTTGACGAGGCTGTACTGGAGCGGGTCGAAGCCC
CTCCGGATCATCACCGGCATGGGGAACAACAGCAAGGACGGGGAGGCTGT
CATCCGGGGCGACGGTGAGAATCGCCCTCCTCGATGTGGCGCGGAAGCCT
TTGACGAGGCTGTACTGGAGCGGGTCGAAGCCCCTCCGGATCATCACCGG
CATGGGGAACAACAGCAAGGACGGGGAGGCTGTCATCCGG
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