prot_H-elongata_contig13904.2716.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13904.2716.1
Unique Nameprot_H-elongata_contig13904.2716.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length194
Homology
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 5.440e-111
Identity = 166/196 (84.69%), Postives = 174/196 (88.78%), Query Frame = 0
Query:    1 MISRAAFEVARAARSAPLRA--GAXXXXXXXXXXXXGVVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            M SRAA E AR ARS PLRA   A  XXXXXXXX  G  V CDDAVHT EYDWPHSGFL +FDHAAIRRGWQVYREVCSTCHSIKF+AFRNLIGVSHSEAEVKKIAAE+EVEDGPNDEGEMFERPAKPSDRIPGPYKNEA+AR ANNGAYPPDLSL+VKGRH GHHY+MSLL GYTE P GKD+LPGL+YNPYFPG
Sbjct:    1 MFSRAAMEAARVARSVPLRARVAAAAXXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPG 196          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.550e-72
Identity = 100/154 (64.94%), Postives = 122/154 (79.22%), Query Frame = 0
Query:   41 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            +  VH A Y W H+G L +FDH AIRRG+QVY+EVC+TCHS++ IAFRN +GV+HS  E+K++ AE +VEDGPNDEGEMF+RP K +D++P PY NE A R AN GAYPPDLSL++K RH G  Y+ SLL GYTE P GKD+LPGLYYNPYF G
Sbjct:   40 ESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDGPNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDG 193          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 219 bits (559), Expect = 8.740e-69
Identity = 102/161 (63.35%), Postives = 123/161 (76.40%), Query Frame = 0
Query:   35 GVVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            G  +  DD + +  Y WP  G LSSFDHAAIRRG+QVYR+VCS+CHSI++I+FRN +GV+H EA  KK+A E+EV D  PND+GEMFERPAK  DR PGPY+NEA  R AN GA PPDLSL+ K RH G  Y+ +LL GY ++P GKD+LPGLYYNPYF G
Sbjct:   28 GAALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAG 188          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7S3PCA1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCA1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.320e-68
Identity = 100/159 (62.89%), Postives = 122/159 (76.73%), Query Frame = 0
Query:   36 VVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            + +  DD VH   + W H GF SS+DHAA+RRG+QVYR+VCS+CHSI+ I +R L+GV+H+E EVK +  E +V DGPNDEGEMFERPAK  D++P PY NE   R AN GAYPPDLSL+VK RH+GH YIMSLL GY + P GK ++ GLYYNPYFPG
Sbjct:   30 ITLLSDDVVHPPVFPWRHRGFFSSYDHAALRRGFQVYRQVCSSCHSIERIRWRELVGVTHTEEEVKDMCKEVDVLDGPNDEGEMFERPAKLFDKLPKPYMNEEQGRAANGGAYPPDLSLMVKARHEGHDYIMSLLTGYMDPPAGKMMMEGLYYNPYFPG 188          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A448ZSM7_9STRA (Cytochrome c domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSM7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.390e-68
Identity = 95/154 (61.69%), Postives = 121/154 (78.57%), Query Frame = 0
Query:   41 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            +D VH   Y W H G+ SSFDHAA+RRG+QVYREVC++CHS+ +I FR L+GV+H++ EVK++A + +V DGPND+GEMFERP KP D IP PY N+ A R AN GAYPPDLSL+VK RH G  Y+ +LL GY + P GK+++PGL+YNPYFPG
Sbjct:   38 EDVVHAPHYPWRHQGYFSSFDHAALRRGYQVYREVCASCHSLHYIRFRELVGVTHTKEEVKQMAMDVDVLDGPNDQGEMFERPGKPYDVIPSPYPNKEAGRAANGGAYPPDLSLMVKARHNGADYVFALLTGYCDPPAGKEMMPGLHYNPYFPG 191          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A1E7EUH1_9STRA (Cytochrom_C1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUH1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 3.820e-68
Identity = 96/154 (62.34%), Postives = 119/154 (77.27%), Query Frame = 0
Query:   41 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            DD VH   Y W H G+ SSFDHAA+RRG+QVYR+VC++CHS+++I FR L+GV+H+  EVK +A + +V DGPND GEMFERP KP D +P PY N+   R AN GAYPPDLSL+VK RH G  Y+M+LL GY E P GK+++PGLYYNPYFPG
Sbjct:   41 DDVVHPPHYPWRHQGYFSSFDHAALRRGFQVYRQVCASCHSLQYIRFRELVGVTHTTQEVKDMAQDVDVLDGPNDIGEMFERPGKPYDVMPSPYPNKETGRAANGGAYPPDLSLMVKARHNGADYVMALLTGYCEAPAGKEMMPGLYYNPYFPG 194          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A6J0BNX1_NEOLC (cytochrome c1, heme protein, mitochondrial-like n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BNX1_NEOLC)

HSP 1 Score: 218 bits (556), Expect = 6.980e-68
Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 0
Query:   44 VHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            +H   Y W   G LSSFDHA++RRGW+VY+ VCS+CHS+K++AFR LIGV+H+EAEVK++AAEYE++DGPND+GE + RP KPSD +P PY NE AAR ANNGAYPPDL+ IV  RH G +YI SLL GY + P G  ++ G YYNPYFPG
Sbjct:   70 LHAPNYAWDFYGHLSSFDHASLRRGWEVYKNVCSSCHSLKYVAFRELIGVTHTEAEVKEMAAEYEIKDGPNDQGEYYMRPGKPSDYVPSPYPNEEAARAANNGAYPPDLTYIVNARHNGENYIFSLLTGYCDPPAGVVLMDGQYYNPYFPG 220          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7C8ZVH5_OPUST (Cytochrome c domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZVH5_OPUST)

HSP 1 Score: 219 bits (557), Expect = 8.390e-68
Identity = 98/153 (64.05%), Postives = 123/153 (80.39%), Query Frame = 0
Query:   42 DAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            + +  A+Y WPHSG LSS+DHA+IRRG+QVY++VC++CHS+  ++FR+L+GV+++E EVK +AAE EVEDGPNDEGEMF RP K SD+ P PYKNE AAR AN GAYPPDLSLI K RH G +Y+ SLL GY + P G ++  GLYYNPYFPG
Sbjct:   86 EGLQCAKYPWPHSGILSSYDHASIRRGYQVYQQVCASCHSMSLLSFRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFMRPGKISDKFPQPYKNEQAARYANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVEIRQGLYYNPYFPG 238          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: I1I9E4_BRADI (Cytochrome c domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=I1I9E4_BRADI)

HSP 1 Score: 216 bits (549), Expect = 7.740e-67
Identity = 105/183 (57.38%), Postives = 129/183 (70.49%), Query Frame = 0
Query:   15 SAPLRAGAXXXXXXXXXXXXGVVVFCDDAVH---TAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            SA LRA A            G + F D+A H    AEY WPH+G LSS+DHA+IRRG QVY++VC++CHS+  I++R+L+GV+++E E K +AAE EV DGPNDEGEMF RP K SDR P PY NE AAR AN GAYPPDLSLI K RH G +Y+ +LL GY + P G  +  GL+YNPYFPG
Sbjct:   37 SAGLRALALLGVGASGLLSFGTIAFADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPG 219          
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A176WEB2_MARPO (Cytochrome c domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WEB2_MARPO)

HSP 1 Score: 215 bits (548), Expect = 1.610e-66
Identity = 100/161 (62.11%), Postives = 124/161 (77.02%), Query Frame = 0
Query:   37 VVFCDDAVH---TAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 194
            VV+ D+A H   + +Y WPH+G +SS+DHA+IRRG QVY++VC+ CHS+  +A+R+LIGV+++E EVK +AAE EVEDGPNDEGEMF+RP KPSD    PY NE AAR AN GAYPPDLSLI K RH G +Y+ +LL GY E P G  V  GL+YNPYFPG
Sbjct:   72 VVYADEAEHGLASPDYPWPHNGIMSSYDHASIRRGHQVYQQVCAACHSMSLVAYRDLIGVAYTEDEVKCLAAEIEVEDGPNDEGEMFQRPGKPSDHFQKPYANENAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYREPPAGVSVREGLHYNPYFPG 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX8_ECTSI5.440e-11184.69Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A7S1BBA1_9STRA9.550e-7264.94Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A835Z587_9STRA8.740e-6963.35Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
A0A7S3PCA1_9STRA1.320e-6862.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZSM7_9STRA2.390e-6861.69Cytochrome c domain-containing protein n=1 Tax=Pse... [more]
A0A1E7EUH1_9STRA3.820e-6862.34Cytochrom_C1-domain-containing protein n=1 Tax=Fra... [more]
A0A6J0BNX1_NEOLC6.980e-6863.58cytochrome c1, heme protein, mitochondrial-like n=... [more]
A0A7C8ZVH5_OPUST8.390e-6864.05Cytochrome c domain-containing protein n=1 Tax=Opu... [more]
I1I9E4_BRADI7.740e-6757.38Cytochrome c domain-containing protein n=3 Tax=Poa... [more]
A0A176WEB2_MARPO1.610e-6662.11Cytochrome c domain-containing protein n=2 Tax=Mar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002326Cytochrome c1PRINTSPR00603CYTOCHROMEC1coord: 114..134
score: 50.0
coord: 185..194
score: 58.93
coord: 49..68
score: 47.14
coord: 147..171
score: 53.43
coord: 69..88
score: 55.0
IPR002326Cytochrome c1PFAMPF02167Cytochrom_C1coord: 51..194
e-value: 1.5E-61
score: 208.0
IPR002326Cytochrome c1PANTHERPTHR10266CYTOCHROME C1coord: 23..194
IPR036909Cytochrome c-like domain superfamilyGENE3D1.10.760.10coord: 40..194
e-value: 4.1E-64
score: 218.2
IPR036909Cytochrome c-like domain superfamilySUPERFAMILY46626Cytochrome ccoord: 43..194
NoneNo IPR availablePANTHERPTHR10266:SF3CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIALcoord: 23..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13904contigH-elongata_contig13904:239..6439 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13904.2716.1mRNA_H-elongata_contig13904.2716.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13904 239..6439 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13904.2716.1 ID=prot_H-elongata_contig13904.2716.1|Name=mRNA_H-elongata_contig13904.2716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MISRAAFEVARAARSAPLRAGAAAAATAGAAAAGGVVVFCDDAVHTAEYD
WPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEV
KKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPP
DLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002326Cyt_c1
IPR036909Cyt_c-like_dom_sf