mRNA_H-elongata_contig13904.2716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13904.2716.1
Unique NamemRNA_H-elongata_contig13904.2716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 5.440e-111
Identity = 166/196 (84.69%), Postives = 174/196 (88.78%), Query Frame = 1 
Query:    1 MISRAAFEVARAARSAPLRA--GAXXXXXXXXXXXXGVVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            M SRAA E AR ARS PLRA   A  XXXXXXXX  G  V CDDAVHT EYDWPHSGFL +FDHAAIRRGWQVYREVCSTCHSIKF+AFRNLIGVSHSEAEVKKIAAE+EVEDGPNDEGEMFERPAKPSDRIPGPYKNEA+AR ANNGAYPPDLSL+VKGRH GHHY+MSLL GYTE P GKD+LPGL+YNPYFPG
Sbjct:    1 MFSRAAMEAARVARSVPLRARVAAAAXXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPG 196
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 227 bits (579), Expect = 9.550e-72
Identity = 100/154 (64.94%), Postives = 122/154 (79.22%), Query Frame = 1 
Query:  121 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            +  VH A Y W H+G L +FDH AIRRG+QVY+EVC+TCHS++ IAFRN +GV+HS  E+K++ AE +VEDGPNDEGEMF+RP K +D++P PY NE A R AN GAYPPDLSL++K RH G  Y+ SLL GYTE P GKD+LPGLYYNPYF G
Sbjct:   40 ESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDGPNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDG 193
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 219 bits (559), Expect = 8.740e-69
Identity = 102/161 (63.35%), Postives = 123/161 (76.40%), Query Frame = 1 
Query:  103 GVVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            G  +  DD + +  Y WP  G LSSFDHAAIRRG+QVYR+VCS+CHSI++I+FRN +GV+H EA  KK+A E+EV D  PND+GEMFERPAK  DR PGPY+NEA  R AN GA PPDLSL+ K RH G  Y+ +LL GY ++P GKD+LPGLYYNPYF G
Sbjct:   28 GAALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAG 188
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7S3PCA1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCA1_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.320e-68
Identity = 100/159 (62.89%), Postives = 122/159 (76.73%), Query Frame = 1 
Query:  106 VVVFCDDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            + +  DD VH   + W H GF SS+DHAA+RRG+QVYR+VCS+CHSI+ I +R L+GV+H+E EVK +  E +V DGPNDEGEMFERPAK  D++P PY NE   R AN GAYPPDLSL+VK RH+GH YIMSLL GY + P GK ++ GLYYNPYFPG
Sbjct:   30 ITLLSDDVVHPPVFPWRHRGFFSSYDHAALRRGFQVYRQVCSSCHSIERIRWRELVGVTHTEEEVKDMCKEVDVLDGPNDEGEMFERPAKLFDKLPKPYMNEEQGRAANGGAYPPDLSLMVKARHEGHDYIMSLLTGYMDPPAGKMMMEGLYYNPYFPG 188
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A448ZSM7_9STRA (Cytochrome c domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSM7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.390e-68
Identity = 95/154 (61.69%), Postives = 121/154 (78.57%), Query Frame = 1 
Query:  121 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            +D VH   Y W H G+ SSFDHAA+RRG+QVYREVC++CHS+ +I FR L+GV+H++ EVK++A + +V DGPND+GEMFERP KP D IP PY N+ A R AN GAYPPDLSL+VK RH G  Y+ +LL GY + P GK+++PGL+YNPYFPG
Sbjct:   38 EDVVHAPHYPWRHQGYFSSFDHAALRRGYQVYREVCASCHSLHYIRFRELVGVTHTKEEVKQMAMDVDVLDGPNDQGEMFERPGKPYDVIPSPYPNKEAGRAANGGAYPPDLSLMVKARHNGADYVFALLTGYCDPPAGKEMMPGLHYNPYFPG 191
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A1E7EUH1_9STRA (Cytochrom_C1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUH1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 3.820e-68
Identity = 96/154 (62.34%), Postives = 119/154 (77.27%), Query Frame = 1 
Query:  121 DDAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            DD VH   Y W H G+ SSFDHAA+RRG+QVYR+VC++CHS+++I FR L+GV+H+  EVK +A + +V DGPND GEMFERP KP D +P PY N+   R AN GAYPPDLSL+VK RH G  Y+M+LL GY E P GK+++PGLYYNPYFPG
Sbjct:   41 DDVVHPPHYPWRHQGYFSSFDHAALRRGFQVYRQVCASCHSLQYIRFRELVGVTHTTQEVKDMAQDVDVLDGPNDIGEMFERPGKPYDVMPSPYPNKETGRAANGGAYPPDLSLMVKARHNGADYVMALLTGYCEAPAGKEMMPGLYYNPYFPG 194
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A6J0BNX1_NEOLC (cytochrome c1, heme protein, mitochondrial-like n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BNX1_NEOLC)

HSP 1 Score: 218 bits (556), Expect = 6.980e-68
Identity = 96/151 (63.58%), Postives = 119/151 (78.81%), Query Frame = 1 
Query:  130 VHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            +H   Y W   G LSSFDHA++RRGW+VY+ VCS+CHS+K++AFR LIGV+H+EAEVK++AAEYE++DGPND+GE + RP KPSD +P PY NE AAR ANNGAYPPDL+ IV  RH G +YI SLL GY + P G  ++ G YYNPYFPG
Sbjct:   70 LHAPNYAWDFYGHLSSFDHASLRRGWEVYKNVCSSCHSLKYVAFRELIGVTHTEAEVKEMAAEYEIKDGPNDQGEYYMRPGKPSDYVPSPYPNEEAARAANNGAYPPDLTYIVNARHNGENYIFSLLTGYCDPPAGVVLMDGQYYNPYFPG 220
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A7C8ZVH5_OPUST (Cytochrome c domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZVH5_OPUST)

HSP 1 Score: 219 bits (557), Expect = 8.390e-68
Identity = 98/153 (64.05%), Postives = 123/153 (80.39%), Query Frame = 1 
Query:  124 DAVHTAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            + +  A+Y WPHSG LSS+DHA+IRRG+QVY++VC++CHS+  ++FR+L+GV+++E EVK +AAE EVEDGPNDEGEMF RP K SD+ P PYKNE AAR AN GAYPPDLSLI K RH G +Y+ SLL GY + P G ++  GLYYNPYFPG
Sbjct:   86 EGLQCAKYPWPHSGILSSYDHASIRRGYQVYQQVCASCHSMSLLSFRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFMRPGKISDKFPQPYKNEQAARYANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVEIRQGLYYNPYFPG 238
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: I1I9E4_BRADI (Cytochrome c domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=I1I9E4_BRADI)

HSP 1 Score: 216 bits (549), Expect = 7.740e-67
Identity = 105/183 (57.38%), Postives = 129/183 (70.49%), Query Frame = 1 
Query:   43 SAPLRAGAXXXXXXXXXXXXGVVVFCDDAVH---TAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            SA LRA A            G + F D+A H    AEY WPH+G LSS+DHA+IRRG QVY++VC++CHS+  I++R+L+GV+++E E K +AAE EV DGPNDEGEMF RP K SDR P PY NE AAR AN GAYPPDLSLI K RH G +Y+ +LL GY + P G  +  GL+YNPYFPG
Sbjct:   37 SAGLRALALLGVGASGLLSFGTIAFADEAEHGLAAAEYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPG 219
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BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Match: A0A176WEB2_MARPO (Cytochrome c domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WEB2_MARPO)

HSP 1 Score: 215 bits (548), Expect = 1.610e-66
Identity = 100/161 (62.11%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:  109 VVFCDDAVH---TAEYDWPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEVKKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPPDLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG 582
            VV+ D+A H   + +Y WPH+G +SS+DHA+IRRG QVY++VC+ CHS+  +A+R+LIGV+++E EVK +AAE EVEDGPNDEGEMF+RP KPSD    PY NE AAR AN GAYPPDLSLI K RH G +Y+ +LL GY E P G  V  GL+YNPYFPG
Sbjct:   72 VVYADEAEHGLASPDYPWPHNGIMSSYDHASIRRGHQVYQQVCAACHSMSLVAYRDLIGVAYTEDEVKCLAAEIEVEDGPNDEGEMFQRPGKPSDHFQKPYANENAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYREPPAGVSVREGLHYNPYFPG 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13904.2716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX8_ECTSI5.440e-11184.69Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A7S1BBA1_9STRA9.550e-7264.94Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A835Z587_9STRA8.740e-6963.35Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
A0A7S3PCA1_9STRA1.320e-6862.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZSM7_9STRA2.390e-6861.69Cytochrome c domain-containing protein n=1 Tax=Pse... [more]
A0A1E7EUH1_9STRA3.820e-6862.34Cytochrom_C1-domain-containing protein n=1 Tax=Fra... [more]
A0A6J0BNX1_NEOLC6.980e-6863.58cytochrome c1, heme protein, mitochondrial-like n=... [more]
A0A7C8ZVH5_OPUST8.390e-6864.05Cytochrome c domain-containing protein n=1 Tax=Opu... [more]
I1I9E4_BRADI7.740e-6757.38Cytochrome c domain-containing protein n=3 Tax=Poa... [more]
A0A176WEB2_MARPO1.610e-6662.11Cytochrome c domain-containing protein n=2 Tax=Mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13904contigH-elongata_contig13904:239..6439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue3.5e-87
Seed eggNOG ortholog2880.D7FVX8
Preferred nameCYC1
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
EggNOG free text desc.Cytochrome c1
EggNOG OGsCOG2857@1,KOG3052@2759
COG Functional cat.C
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorymitochondrion
Exons5
Model size582
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13904.2716.1prot_H-elongata_contig13904.2716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13904 239..6439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.691373-CDS-H-elongata_contig13904:238..4341622929824.691373-CDS-H-elongata_contig13904:238..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 239..434 -
1691679173.5634625-CDS-H-elongata_contig13904:238..4341691679173.5634625-CDS-H-elongata_contig13904:238..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 239..434 -
1622929824.704192-CDS-H-elongata_contig13904:705..7941622929824.704192-CDS-H-elongata_contig13904:705..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 706..794 -
1691679173.5788543-CDS-H-elongata_contig13904:705..7941691679173.5788543-CDS-H-elongata_contig13904:705..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 706..794 -
1622929824.7167408-CDS-H-elongata_contig13904:3680..37861622929824.7167408-CDS-H-elongata_contig13904:3680..3786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 3681..3786 -
1691679173.5887508-CDS-H-elongata_contig13904:3680..37861691679173.5887508-CDS-H-elongata_contig13904:3680..3786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 3681..3786 -
1622929824.7272437-CDS-H-elongata_contig13904:5623..57601622929824.7272437-CDS-H-elongata_contig13904:5623..5760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 5624..5760 -
1691679173.6004457-CDS-H-elongata_contig13904:5623..57601691679173.6004457-CDS-H-elongata_contig13904:5623..5760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 5624..5760 -
1622929824.7544339-CDS-H-elongata_contig13904:6385..64391622929824.7544339-CDS-H-elongata_contig13904:6385..6439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 6386..6439 -
1691679173.60961-CDS-H-elongata_contig13904:6385..64391691679173.60961-CDS-H-elongata_contig13904:6385..6439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13904 6386..6439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13904.2716.1

>prot_H-elongata_contig13904.2716.1 ID=prot_H-elongata_contig13904.2716.1|Name=mRNA_H-elongata_contig13904.2716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MISRAAFEVARAARSAPLRAGAAAAATAGAAAAGGVVVFCDDAVHTAEYD
WPHSGFLSSFDHAAIRRGWQVYREVCSTCHSIKFIAFRNLIGVSHSEAEV
KKIAAEYEVEDGPNDEGEMFERPAKPSDRIPGPYKNEAAARGANNGAYPP
DLSLIVKGRHKGHHYIMSLLMGYTETPFGKDVLPGLYYNPYFPG
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mRNA from alignment at H-elongata_contig13904:239..6439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13904.2716.1 ID=mRNA_H-elongata_contig13904.2716.1|Name=mRNA_H-elongata_contig13904.2716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6201bp|location=Sequence derived from alignment at H-elongata_contig13904:239..6439- (Himanthalia elongata Himel1 dioecious)
ATGATATCGCGCGCAGCATTCGAAGTGGCACGTGCGGCGCGCTCGGCGCC
CTTGGTGAGAACATCAGAAGTAGTAATCTCGTGTGTATTGACTGTAATGA
GTACTCGTAGAGGGGCACGAGAATCTGAGCGTGCGGGGAGGGTAGATCAC
ATTCAGTTCAGGATGACTGCTGATATACAGCATATGTTGAGAAGCTGGGG
AGTGTCTGTGATAATCAGCGGTTCTTTTTCAGCAAGAAAACCGCACACGG
AAACCGCCAGGTATATCTTCGAATCGAGACCACCACCTCTGACTCGGCGA
TCGCACCAACATGGTCTGCCCTGAAATCACCTTGACCGATCGACCGTCAG
CGTTAACAAGGATTGAGGTTCGATCTCCTTCTCCCGAGTGTTTCGATCTG
ATGTCGATCCACCACGATATATCTGCTCATACTCTCGAACAAAATGCTAC
AACGTTAATCAAAGCTCCTTCACACACCCACATCTTGAGACGCGAGGAAA
TTAATTCTGACTACAGCATAATACAACAATCTGTTACAGAGGATGTTGGA
ACCAAGGCTCTTCTCGTCCAGAGAGAGCCCCTCAATTGTTAGAGGAATTA
AAGACATTTTTTTTCGGAACTACTCACCCTCGAACATCGTACGATTCGTT
GACACCTCTAATCCGGTACGTGCTTGCAGCGAGCCGGCGCGGCGGCGGCG
GCAACGGCGGGCGCGGCAGCGGCTGGTGGTGTGGTTGTGTTCTGCGATGA
TGCTGTTCACACGGCGGAATATGATTGGCCTCATTCGGGATTTCTCTCCT
CGTTCGACCACGCGGCGTAAGTCCCCCCCCACACCTATCTGCCGAATGCC
GTTGATATCACGGCTCTCATCATGACGTGGTGGTACAAAAGAGCACGTGT
AGATCGGACACTTAAATCAAGCTTCTAGAAGTAGTTACCGTCGACATGCG
AGATCAATGCGCCTTTGGTAAACCGCCAGCGCCGGTGCGATTCTGCAACA
GCCACAGCTCCAGTAGCTCTTCCCCCACGGGTTAATCCAAAATACAGCAT
AGGATAAGAATCAGCTGTAGAGTTTCTTGGTTGAACCAGCTCAGACAGAA
ACGATGACCTCATTCGTAAGTGGATTCGGACAAAGTTGCGCTTCGAACGG
TAGAGCTGAGTCGCGATCGATGGACCATTTTCGTACCTACCCGCGCTACT
CGCACACGGACGACGCGGCGCCATTCTTGTTTTCAGAAACCTCAAATCGC
CCTGAAACTGTTGTTAGAGCAGCATTTCTTCAAGCACCGGCGCTCTGTAG
CTCTATCGTGCGATTTGAGAAAAACTCATACGCGGCATCGTGATTATGAA
ATACCAACGTCAAAGCGTTTTTGATTACCTCTTGCCGATACGTTAATAGA
CGCGCGCAGTCCCCATTCTTTTTTTCCCAACATATCTAACAGACGACTTC
CATTGCTCTCCCCTGAAGAGTAAAATGATCTAGGGAATAATACAGATAAC
TAATCAGCTGACTCTTCTGATCAAGCTCACCAAGCTACTTCAGCGTGCCC
CTTCTTTGTTTGATCGTACGATCACGTGCTTCCCAACAACCTTTAGCTTT
CTGCCATCTATATACATGTGTATTTTGTCTTGCTTTCTGCCATCTATATA
CATGTGTATTTTGTCTTGCTTTCTGCCGATGAGGCCATTCCACAAAGCTG
GGTCGCCAAGTCTTTCCCCGGTTCACGCTTTCGCTTTTTATCACTATCAA
TGCAAGTTATCAACCCCAAGGGTAATAATCGACAGTTTTGGTTCCCCCCC
CCCGTTATATTAGCATATCGTATTCATAGATGCGGTAGAACCCTGACATG
CGTGCGAGCTCATACACTAGTCCCGCTAACATCATCTTTCCTACACCGCT
TCAAAAAACGGTTGGAGTTTGCTTCCTGACGCCCTCGGAGGCATTCCTCC
GGGAAGTACAAAACGATTTGTGTCCCCTCCGCGATCGTCTAACGACCAAC
TCTTTTCTTCTCCGTTAAGCTAGGCATATATATTTTTTAAAGCACCCGAT
CTTTTCATCCCAAATAATTGCCATGGAAGACGACCGATTATAAAAAACGC
TGATTGTTCACGCACTCACGTGTCTGCCCTAAAGCATTCAAAGTCCACAC
CGCGTGAGTAAGTAAGGCACTCGTTCCTTGAGGCGCTTCCTCCGTTCCAC
GAGATGAGCGAACAGCCTGGTTGTCAGTTGCGGCCACTCGCGAGTAACCC
TCAAGCGTCAAGAACTCTCTATAGATCACATAATGAAAACTCTTCGGATG
TAGCCGAAACCAACCCACGCGTTCAACACACCACGCACCTTTCGGCGCCA
TCTCTAGAGCCGGCGATCTTCTGTTTGTCGGCATGACGCAGAAACGCCAC
TTTTCGTCGCCCCGATTGTGCCCCTACTGTTAAAGCTGCGGGGCCTTTTT
TTGCGTTGCTGTCGCAAAGCAGACCGCCCGGTGTTCGCTGGTCGTCGCTG
ACTCAGTCAGATCTGAGCTGACAACCGCTTTTTTTTTTGCACACCCTCGT
CGCGCGTTTTTTTTTACGACCTCCCTCTTTGCTGTTGTTTGGTGTCCCGT
CTTTTTCGTTCGGGTGTGCTCTGTCGTGCGCCTCTTGTTTCATGTTCGAT
CAGCATCCGCCGAGGGTGGCAGGTGTACCGGGAAGTGTGCTCGACGTGCC
ACTCCATCAAGTTCATCGCCTTCCGTAACCTGATCGGCGTTTCCCACTCT
GAGGCCGAGGTGAGGAGAAGCGGGAAGCCTCCCCCCCCTCCCGCCCCCAA
TCAGTGCTGTCAGCAATCCCCTATTTTTGCATTGAAAACCCTTATTTTTT
ACCCCTGGACCTCTGTGCTAGTTCCCTCCGGCAAGCCTTAGATGGCTGAG
CCCTGCCTTTACTCCTGCTGAGGAGGTGTGTGGAGTTTGGAATCGTGAGA
CGTCTATGCGTTTCACAATTAAGGATTGAAGGACCCAAAAAAGTATGCGC
TGACCAGAAACGCGGCGGAATATACGAGACCTTGAAGCGGAGACGTAATT
CGACCAAGCGGCTTACACCGGATAACTTGAGATCGGCAGCCGCCCCTTCC
TAGCGCTGTGTTTGCAGACCTGCGAAAAGGTATAAAGAAGGTTTGCGTAT
ATTTTTTGTTGATCGCGAGCAAGCCTGTCGACCAACATATTTAGGTACAA
CATTTTAGTGTTTTTTTTTGTCGTTGTACGGTTCGCCCTGTCACCGTTTT
TGAAGACTCAGGACATTTTGGCGATACCATTTTCAGATTAACTGTGACAG
TATCGTGGTCGCTCAATAATTGCTAGATACAGTAAGGATAGGCGTTTGTG
GGTCGAGAAAGCCTCGGTATTATAAGTAACCTGAACTAATAATACCAAGA
GCAGTAGTGCTAATGGGCAATATTTTGAATGATGAACTAACTGTAAAGAA
GTATGGAATAAATTTTTAACAGCACTAGTATTCAATGATCGTTTGAGTAG
AACGTTGTCCTTGCTCGATATGATGACCCCTAAAAGGCGAGGCTAAAAGG
CGAGGCAAAAGCAAAGCCAGTCTCCGTAGCAGTACTTTCTACATCGGTTT
AACAGGCACTTCGGAATGCCCTGCCCGAGATAATGTTGCGCCCCATCTGT
TTTACTCGCTGCGAGACAGCGGTTGTCACTACCACAAAATACAACCGTTG
CCGCGACATTGTCATCTCCGTCTGAGTAACCTAGTATAAGGTCGGGTATA
CCCTTGGCCGCACGATCGCGGTTTCTAGGCGTTCGCAATAGAGATTCGAA
CCCTGCACCAACTGGAAGCGGGTCGCGAGATTTTATGACGAAAATGACTT
TATTCCCTCTAACCTTAGCCGTCCTCCACCCCTTGATGGTAAGCAATACT
ATTCGTGACGGTATCGCACATGTCCATTGCACCAATAGTGGGTACGGGAA
AAGAGAGGCGCACAATAATTGATCCATGGGGTTAACTTAATGGGCTGCAC
CCGTTATTCAATCTACCGGTCGACTCTCTTGTGGTAAGCGCCATCGGTAC
AGTATGCAGTTGCGTGACCTGTCGGGATTGGCCCAATGGCGGTTGACGAT
AGAAATGGATGCCGTCGCGGAAAACGAAAGGATTGAGGTGATCCCGGAAG
TACACACCAGATTCAGCTTGGGTTGAGAGAAAGAGCAGACTGACGCGGGA
GGGACTGCCAAACCCGTCTCGCGAGACGAAATTTTAAAGTTCGAACGGGG
ATAAGGAAAAATCATAATTTTCCCCGATTAGCTGACCACAAGCAGAAGGC
AGCCAAATCCGGTTGATCATTACTCTGCTTTATACGATGACGTCACACAC
ACGTTCAGCATTGTCATAGCACTAGTCAGTTTCACCGTCGGGCGCTCCTA
CTACAGCAAACTCTGCACTACCCAGGATTGCGCACACGCGGACAACATGC
CCGCATTTGAAATCCGTCTCGGGTTATCTAGTACAGTAGTATCAATAGCG
ATAATCACACCGTGAGATAATACATTTTCGTTGGAAATACAGTACGAAGT
ACTGTTGCAAGACAGTGTGTATTTTTAAACATACGGATACAGTGAAAACG
ATTCACCTGTCGATACAGCAGGATCCTGTACTACTAAAAAGCAATTTGAA
CCCCGCATCGTAGAAAAATAATGTTTGTTGCATCTCAGGCGCGAACGAGA
ACAGGGAAAATTATTTTCCCTGTTCCGCTGACCACGAGTAGAAGGAAACC
AAATCCAATTGATACTTCTGCTGAAAGTTAGACCATATATACATATATAC
TAGAGCTCAGAAGAACGCCAAGCGGTCTTTTTGATGGATAGCCGACCTCA
AGGACTCTCATTGGCATAGAAGTGCGACAGGTATATGCTGCCCTTGGGCT
GTATCACTGGAATACCCTGCCGACATGGCAACAAAAACACTCTACATCGA
CGCGCGACAACAGAATCCTTCGGTTATTCGCTCCCACAAAATATATTATC
TTGCTGTCTGCGTCACGCCCTTGTTGATTCTGTCGATGGTAGAGAGTTGA
TGAAATTGCGGTTCAATTTTGACCAGGGGACACTTAAGCAAAAATACTAA
TATTCGAAACCCCCTCAAAGTTATTTAAAAAAACCCGTCAGCTGTAACTA
AGCTTGTAAAATAATTTTGACAGGGTTGCTTAAAGCCGATTGGAAGTCTG
ATCAATTTCCTGTCGTAACCTTGCACAGCGAAGAAGCACCACAGTATTGG
CAGGGAACCCCTCCATGTGACAACTCCTTCGCACGATATTGAAATGAAGC
GTAATTAATCGAAGTTTGCCGCCCATATTGTTGTTAACTATCGCGTGGCG
CTTGCCCTGAATCGGGTTGCGCACCCAGCTGGCGACGGCTACAATTTCGT
TCCTGTCGCGGAGTTTGTAAAGAGTTATATAATACACTTCTATTTAGAAG
ATTTTGCCGAATTCGTCGTGAGAGCCTTGATTTGACAGTGTGGATCCTGC
TTTGCGGCTTGATTGCCGTTCTTGTCAAGTATAACGGGCGTTCCGGATGT
GTTGACGGGCGTGTGTACCTTGGTTTTGTGACACGTTGTGCTCTCTCGCG
GCGATTTTGGTCCGCTGCCTTCCCGCCGGCCCCCTCGCCGGGCAGGTCAA
GAAGATCGCGGCTGAGTACGAGGTGGAAGACGGGCCGAACGACGAGGGCG
AGATGTTCGAGCGCCCCGCCAAACCGTCCGACCGGTGAGAGCGTCGCAAA
AAATTATGAACGGCGTTAACCCCCTAAGGAGGAAGAATGTTTCGCCGTTT
ATTTTCTCGCGAGGATCCCGCAAGAAGATGTCTGCATTAGGTTCATCCAC
GATATCGACGCCCGTCTTCCCCTTTGCCTTCCTCTGACCGAACAGTCGAC
TACTGGGGTGTTTTGTAACAACTTCCAGTTTGTTTGAGCTCGACTTTTCC
CCCCACGCCCCTCCTCGGATTATGCATCCGATTTTTTTTTCTCAAACTCG
CGCAGCATCCCCGGTCCGTACAAGAACGAGGCTGCCGCCCGCGGAGCGAA
CAACGGGGCCTACCCGCCGGACCTGTCTCTGATCGTCAAGGGGCGCCACA
AGGGTCACCACTACATCATGTCGCTCCTGATGGGCTATACTGAAACCCCC
TTTGGGAAGGATGTTCTCCCCGGGCTGTACTACAACCCGTACTTCCCCGG
T
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Coding sequence (CDS) from alignment at H-elongata_contig13904:239..6439-

>mRNA_H-elongata_contig13904.2716.1 ID=mRNA_H-elongata_contig13904.2716.1|Name=mRNA_H-elongata_contig13904.2716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig13904:239..6439- (Himanthalia elongata Himel1 dioecious)
ATGATATCGCGCGCAGCATTCGAAGTGGCACGTGCGGCGCGCTCGGCGCC
CTTGATGATATCGCGCGCAGCATTCGAAGTGGCACGTGCGGCGCGCTCGG
CGCCCTTGCGAGCCGGCGCGGCGGCGGCGGCAACGGCGGGCGCGGCAGCG
GCTGGTGGTGTGGTTGTGTTCTGCGATGATGCTGTTCACACGGCGGAATA
TGATTGGCCTCATTCGGGATTTCTCTCCTCGTTCGACCACGCGGCCGAGC
CGGCGCGGCGGCGGCGGCAACGGCGGGCGCGGCAGCGGCTGGTGGTGTGG
TTGTGTTCTGCGATGATGCTGTTCACACGGCGGAATATGATTGGCCTCAT
TCGGGATTTCTCTCCTCGTTCGACCACGCGGCCATCCGCCGAGGGTGGCA
GGTGTACCGGGAAGTGTGCTCGACGTGCCACTCCATCAAGTTCATCGCCT
TCCGTAACCTGATCGGCGTTTCCCACTCTGAGGCCGAGCATCCGCCGAGG
GTGGCAGGTGTACCGGGAAGTGTGCTCGACGTGCCACTCCATCAAGTTCA
TCGCCTTCCGTAACCTGATCGGCGTTTCCCACTCTGAGGCCGAGGTCAAG
AAGATCGCGGCTGAGTACGAGGTGGAAGACGGGCCGAACGACGAGGGCGA
GATGTTCGAGCGCCCCGCCAAACCGTCCGACCGGTCAAGAAGATCGCGGC
TGAGTACGAGGTGGAAGACGGGCCGAACGACGAGGGCGAGATGTTCGAGC
GCCCCGCCAAACCGTCCGACCGCATCCCCGGTCCGTACAAGAACGAGGCT
GCCGCCCGCGGAGCGAACAACGGGGCCTACCCGCCGGACCTGTCTCTGAT
CGTCAAGGGGCGCCACAAGGGTCACCACTACATCATGTCGCTCCTGATGG
GCTATACTGAAACCCCCTTTGGGAAGGATGTTCTCCCCGGGCTGTACTAC
AACCCGTACTTCCCCGGTCATCCCCGGTCCGTACAAGAACGAGGCTGCCG
CCCGCGGAGCGAACAACGGGGCCTACCCGCCGGACCTGTCTCTGATCGTC
AAGGGGCGCCACAAGGGTCACCACTACATCATGTCGCTCCTGATGGGCTA
TACTGAAACCCCCTTTGGGAAGGATGTTCTCCCCGGGCTGTACTACAACC
CGTACTTCCCCGGT
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