prot_H-elongata_contig13892.2713.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig13892.2713.1
Unique Name	prot_H-elongata_contig13892.2713.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	92

Homology

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BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5L3E9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.910e-22
Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  A AP WF  V+  VT  L  +  YLDD    D +P+ HVAT+ + F RLR HNLKL+P K   G   A+FLGH I  DGVRPN
Sbjct:    1 MPQGSAAAPGWFCKVVNEVTKNLRGVASYLDDLIVFDATPVAHVATIRSLFERLRAHNLKLTPPKATIGATEAEFLGHTISPDGVRPN 88

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BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.610e-22
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  132 MPQGSSAAPGWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTIRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPN 219

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BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JR23_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR23_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.480e-21
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  148 MPQGRSAAPGWFCKVVNEVIENLRGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 235

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BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5J9N0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.350e-21
Identity = 45/88 (51.14%), Postives = 52/88 (59.09%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G  +ADFLGH I  DGVRPN
Sbjct:  462 MPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATKADFLGHTISPDGVRPN 549

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.140e-21
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  289 MPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPN 376

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5KIF5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.180e-21
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  133 MPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 220

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.290e-21
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  394 MPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 481

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5KVD3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.190e-19
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+     RLR HNLK +P K   G  +ADFLGH I  DGVRPN
Sbjct:    1 MPQGSSAAPVWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTMRALVERLRAHNLKPTPPKATIGATQADFLGHTISPDGVRPN 88

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5L052_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L052_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-19
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + AP WF  V+  V   L  +  YLDD    D++P  HV T+   F RLR HNLKL+P K   GT  A+FLGH I  DGVRPN
Sbjct:  432 MPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDNNPAFHVDTMRALFERLRTHNLKLTPPKATIGTTEANFLGHTISPDGVRPN 519

[Close]

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5K1T1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.580e-19
Identity = 43/88 (48.86%), Postives = 51/88 (57.95%), Query Frame = 0

Query:    1 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 88
            MPQ  + A  WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR +NLKL+P K   G  +ADFLGH I  DGVRPN
Sbjct:    1 MPQGSSAAAGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTYNLKLTPPKATIGATKADFLGHTISPDGVRPN 88

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot

BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L3E9_9PHAE	2.910e-22	52.27	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JV14_9PHAE	6.610e-22	51.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JR23_9PHAE	3.480e-21	51.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5J9N0_9PHAE	4.350e-21	51.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JFL9_9PHAE	8.140e-21	51.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KIF5_9PHAE	8.180e-21	51.14	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JUZ4_9PHAE	8.290e-21	51.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVD3_9PHAE	1.190e-19	48.86	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L052_9PHAE	1.300e-19	50.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K1T1_9PHAE	2.580e-19	48.86	Reverse transcriptase domain-containing protein n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.270		coord: 3..86 e-value: 5.3E-13 score: 50.9
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig13892	contig	H-elongata_contig13892:11..286 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig13892.2713.1	mRNA_H-elongata_contig13892.2713.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig13892 8..286 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig13892.2713.1 ID=prot_H-elongata_contig13892.2713.1|Name=mRNA_H-elongata_contig13892.2713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATF
FTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPNLCV*