mRNA_H-elongata_contig13892.2713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13892.2713.1
Unique NamemRNA_H-elongata_contig13892.2713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5L3E9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.030e-22
Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    4 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            MPQ  A AP WF  V+  VT  L  +  YLDD    D +P+ HVAT+ + F RLR HNLKL+P K   G   A+FLGH I  DGVRPN
Sbjct:    1 MPQGSAAAPGWFCKVVNEVTKNLRGVASYLDDLIVFDATPVAHVATIRSLFERLRAHNLKLTPPKATIGATEAEFLGHTISPDGVRPN 88
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.480e-22
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  131 KMPQGSSAAPGWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTIRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPN 219
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5J9N0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.430e-21
Identity = 45/89 (50.56%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G  +ADFLGH I  DGVRPN
Sbjct:  461 KMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATKADFLGHTISPDGVRPN 549
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JR23_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR23_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.610e-21
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:    4 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  148 MPQGRSAAPGWFCKVVNEVIENLRGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 235
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.550e-21
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  288 KMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPN 376
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5KIF5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.570e-21
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  132 KMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 220
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.630e-21
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+   F RLR HNLKL+P K   G   ADFLGH I  DGVRPN
Sbjct:  393 KMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN 481
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5L052_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L052_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.250e-20
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  + AP WF  V+  V   L  +  YLDD    D++P  HV T+   F RLR HNLKL+P K   GT  A+FLGH I  DGVRPN
Sbjct:  431 KMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDNNPAFHVDTMRALFERLRTHNLKLTPPKATIGTTEANFLGHTISPDGVRPN 519
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5KVD3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    4 MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            MPQ  + AP WF  V+  V   L  +  YLDD    DD+P  HV T+     RLR HNLK +P K   G  +ADFLGH I  DGVRPN
Sbjct:    1 MPQGSSAAPVWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTMRALVERLRAHNLKPTPPKATIGATQADFLGHTISPDGVRPN 88
[Close]
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Match: A0A6H5JB88_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB88_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-19
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RMPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATFFTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPN 267
            +MPQ  A AP WF  V+  V   L  +  YL D    D +P  HVAT+ + F RLR H+LKL+P K   G   A+FLGH I  DGVRPN
Sbjct:  131 KMPQGSAAAPGWFFKVVNEVIKNLRGVASYLADLIVFDATPAAHVATIRSLFERLRTHSLKLTPPKATIGATEAEFLGHTISPDGVRPN 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13892.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3E9_9PHAE3.030e-2252.27Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JV14_9PHAE3.480e-2250.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J9N0_9PHAE2.430e-2150.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JR23_9PHAE3.610e-2151.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFL9_9PHAE4.550e-2150.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIF5_9PHAE4.570e-2150.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JUZ4_9PHAE4.630e-2150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L052_9PHAE7.250e-2049.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVD3_9PHAE1.240e-1948.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JB88_9PHAE2.410e-1948.31Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13892contigH-elongata_contig13892:8..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog121225.PHUM531970-PA
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,3ECJT@33342,3SIRK@50557,41WI3@6656,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size276
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.520803-UTR-H-elongata_contig13892:7..101622929824.520803-UTR-H-elongata_contig13892:7..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13892 8..10 +
1691679173.4773629-UTR-H-elongata_contig13892:7..101691679173.4773629-UTR-H-elongata_contig13892:7..10Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13892 8..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.5412452-CDS-H-elongata_contig13892:10..2861622929824.5412452-CDS-H-elongata_contig13892:10..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13892 11..286 +
1691679173.4876826-CDS-H-elongata_contig13892:10..2861691679173.4876826-CDS-H-elongata_contig13892:10..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13892 11..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13892.2713.1prot_H-elongata_contig13892.2713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13892 11..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13892.2713.1

>prot_H-elongata_contig13892.2713.1 ID=prot_H-elongata_contig13892.2713.1|Name=mRNA_H-elongata_contig13892.2713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MPQDVAGAPAWFVSVMRLVTSGLENIRMYLDDATDSDDSPIKHVATLATF
FTRLRLHNLKLSPNKTRTGTARADFLGHVIPHDGVRPNLCV*
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mRNA from alignment at H-elongata_contig13892:8..286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13892.2713.1 ID=mRNA_H-elongata_contig13892.2713.1|Name=mRNA_H-elongata_contig13892.2713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig13892:8..286+ (Himanthalia elongata Himel1 dioecious)
CGCATGCCTCAAGATGTCGCCGGCGCCCCCGCTTGGTTCGTCTCTGTCAT
GCGCCTCGTCACAAGCGGTCTCGAGAACATCCGAATGTACCTCGACGACG
CCACCGACTCCGACGATTCCCCCATCAAGCATGTAGCCACTTTAGCTACC
TTTTTCACACGCCTGCGACTTCACAATCTGAAACTCTCTCCGAACAAAAC
TCGGACTGGCACGGCTCGTGCCGACTTCCTGGGACACGTCATACCGCACG
ACGGCGTACGTCCCAATCTCTGCGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig13892:8..286+

>mRNA_H-elongata_contig13892.2713.1 ID=mRNA_H-elongata_contig13892.2713.1|Name=mRNA_H-elongata_contig13892.2713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig13892:8..286+ (Himanthalia elongata Himel1 dioecious)
ATGCCTCAAGATGTCGCCGGCGCCCCCGCTTGGTTCGTCTCTGTCATGCG
CCTCGTCACAAGCGGTCTCGAGAACATCCGAATGTACCTCGACGACGCCA
CCGACTCCGACGATTCCCCCATCAAGCATGTAGCCACTTTAGCTACCTTT
TTCACACGCCTGCGACTTCACAATCTGAAACTCTCTCCGAACAAAACTCG
GACTGGCACGGCTCGTGCCGACTTCCTGGGACACGTCATACCGCACGACG
GCGTACGTCCCAATCTCTGCGTATAAATGCCTCAAGATGTCGCCGGCGCC
CCCGCTTGGTTCGTCTCTGTCATGCGCCTCGTCACAAGCGGTCTCGAGAA
CATCCGAATGTACCTCGACGACGCCACCGACTCCGACGATTCCCCCATCA
AGCATGTAGCCACTTTAGCTACCTTTTTCACACGCCTGCGACTTCACAAT
CTGAAACTCTCTCCGAACAAAACTCGGACTGGCACGGCTCGTGCCGACTT
CCTGGGACACGTCATACCGCACGACGGCGTACGTCCCAATCTCTGCGTAT
AA
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