prot_H-elongata_contig13663.2584.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13663.2584.1
Unique Nameprot_H-elongata_contig13663.2584.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length355
Homology
BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.370e-18
Identity = 139/375 (37.07%), Postives = 181/375 (48.27%), Query Frame = 0
Query:    1 TEARWRARAEGTISSQEVKLEQLKTELVAARQQGADLRHMEVENKDLKDRIERQEVFQRRRMEKEKKERRS----KSGLRASLSDPSGEYKAGGRDSVQLVPLPPPMNERKNTGDVNSMGSGVRSAKVPTVAPRGRVDKEGGARGGGGGERRGVRSVSPFARPFTVSSSSRGSAKFFSTPEYXXXXXXRNAEKENNVKGRRSTAS------------GAETSCSXXXXXXXXXXXGR-----NEKRGHAGGCTGVSDVDGGRGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSSGTGRSRPLESRKNMNVSKSPAVEPSDSTQPSRGRWVNLPKECKRAVATKSAAVAAPRSSSLGKQTRAATGWR 354
            +EARWRARAE  ++ +   LE+   E+ A +QQG +LRHME ENKDLK RIERQE F +RRMEKEK+E+R+      G       P+G   A GR + QL+PLPP M      G+ +  G+  R +  PT A RG     G             R +    RP +  S + GS         XXXXXX +A+KEN V+ +++ A+            G    C   XXXXXXXXX       ++     GGC   +   GGR                     XXXXXXXXXXX       S+    ++PLES K   V++SPA          R           R  +  +A V APRSSSLG Q+RA++GWR
Sbjct:  397 SEARWRARAEDVMAGRAADLERANAEVAAMKQQGVELRHMEAENKDLKARIERQEAFHKRRMEKEKREKRAGRPVSGGSGRVPPGPAGGA-ASGRAAAQLLPLPPLMTY----GEDDGRGASRRLSMTPTSASRG-----GDXXXXXXXXXXXXRELFSSERPRSA-SEAHGSGXXXXXXXXXXXXXXNHADKENRVQQKQAAAAQRRGAPAWEGNGGGGADCEAGXXXXXXXXXXXXXAFTDDDAAGRGGCR--APASGGR-----LKTSGLSSSGVNSRGRXXXXXXXXXXXVGRATVASAAAAATQPLESSKIRRVARSPATRGLHEATGGRHATTASSHSSSRGRSAVAAKVGAPRSSSLGIQSRASSGWR 753          
BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.180e-10
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   25 TELVAARQQGADLRHMEVENKDLKDRIERQEVFQRRRMEKEKKERRS----KSGLRASLSDPSGEYKAGGRDSVQLVPLPPPMNERKNTGDVNSMGSGVRSAKVPTVAPRG 131
            +++ A + QG +LRHME ENKDLK RIERQE F +RRME+EK+E+R+      G       P+G   A GR + QL+PLPP M+     G+ ++ G   R +  PT A RG
Sbjct:  196 SKVAAMKHQGVELRHMEAENKDLKARIERQEAFHKRRMEREKREKRAGRPVSGGCGRVPPGPAGGA-ASGRAAAQLLPLPPLMSY----GEDDARGGSRRLSMTPTSATRG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBU8_ECTSI3.370e-1837.07Similar to centromere protein E n=1 Tax=Ectocarpus... [more]
A0A6H5KXI9_9PHAE1.180e-1045.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..68
NoneNo IPR availableCOILSCoilCoilcoord: 6..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13663contigH-elongata_contig13663:5710..8060 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13663.2584.1mRNA_H-elongata_contig13663.2584.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13663 5710..8060 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13663.2584.1 ID=prot_H-elongata_contig13663.2584.1|Name=mRNA_H-elongata_contig13663.2584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=355bp
TEARWRARAEGTISSQEVKLEQLKTELVAARQQGADLRHMEVENKDLKDR
IERQEVFQRRRMEKEKKERRSKSGLRASLSDPSGEYKAGGRDSVQLVPLP
PPMNERKNTGDVNSMGSGVRSAKVPTVAPRGRVDKEGGARGGGGGERRGV
RSVSPFARPFTVSSSSRGSAKFFSTPEYSTPEYSRNAEKENNVKGRRSTA
SGAETSCSSSGSNSSGSGSGRNEKRGHAGGCTGVSDVDGGRGDNRKANGA
GDTHAKDASAGKRNSQRAGSRGGDRAREKTSSGTGRSRPLESRKNMNVSK
SPAVEPSDSTQPSRGRWVNLPKECKRAVATKSAAVAAPRSSSLGKQTRAA
TGWR*
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