mRNA_H-elongata_contig13663.2584.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13663.2584.1
Unique NamemRNA_H-elongata_contig13663.2584.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.370e-18
Identity = 139/375 (37.07%), Postives = 181/375 (48.27%), Query Frame = 1 
Query:    1 TEARWRARAEGTISSQEVKLEQLKTELVAARQQGADLRHMEVENKDLKDRIERQEVFQRRRMEKEKKERRS----KSGLRASLSDPSGEYKAGGRDSVQLVPLPPPMNERKNTGDVNSMGSGVRSAKVPTVAPRGRVDKEGGARGGGGGERRGVRSVSPFARPFTVSSSSRGSAKFFSTPEYXXXXXXRNAEKENNVKGRRSTAS------------GAETSCSXXXXXXXXXXXGR-----NEKRGHAGGCTGVSDVDGGRGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSSGTGRSRPLESRKNMNVSKSPAVEPSDSTQPSRGRWVNLPKECKRAVATKSAAVAAPRSSSLGKQTRAATGWR 1062
            +EARWRARAE  ++ +   LE+   E+ A +QQG +LRHME ENKDLK RIERQE F +RRMEKEK+E+R+      G       P+G   A GR + QL+PLPP M      G+ +  G+  R +  PT A RG     G             R +    RP +  S + GS         XXXXXX +A+KEN V+ +++ A+            G    C   XXXXXXXXX       ++     GGC   +   GGR                     XXXXXXXXXXX       S+    ++PLES K   V++SPA          R           R  +  +A V APRSSSLG Q+RA++GWR
Sbjct:  397 SEARWRARAEDVMAGRAADLERANAEVAAMKQQGVELRHMEAENKDLKARIERQEAFHKRRMEKEKREKRAGRPVSGGSGRVPPGPAGGA-ASGRAAAQLLPLPPLMTY----GEDDGRGASRRLSMTPTSASRG-----GDXXXXXXXXXXXXRELFSSERPRSA-SEAHGSGXXXXXXXXXXXXXXNHADKENRVQQKQAAAAQRRGAPAWEGNGGGGADCEAGXXXXXXXXXXXXXAFTDDDAAGRGGCR--APASGGR-----LKTSGLSSSGVNSRGRXXXXXXXXXXXVGRATVASAAAAATQPLESSKIRRVARSPATRGLHEATGGRHATTASSHSSSRGRSAVAAKVGAPRSSSLGIQSRASSGWR 753
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BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.180e-10
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:   73 TELVAARQQGADLRHMEVENKDLKDRIERQEVFQRRRMEKEKKERRS----KSGLRASLSDPSGEYKAGGRDSVQLVPLPPPMNERKNTGDVNSMGSGVRSAKVPTVAPRG 393
            +++ A + QG +LRHME ENKDLK RIERQE F +RRME+EK+E+R+      G       P+G   A GR + QL+PLPP M+     G+ ++ G   R +  PT A RG
Sbjct:  196 SKVAAMKHQGVELRHMEAENKDLKARIERQEAFHKRRMEREKREKRAGRPVSGGCGRVPPGPAGGA-ASGRAAAQLLPLPPLMSY----GEDDARGGSRRLSMTPTSATRG 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13663.2584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBU8_ECTSI3.370e-1837.07Similar to centromere protein E n=1 Tax=Ectocarpus... [more]
A0A6H5KXI9_9PHAE1.180e-1045.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13663contigH-elongata_contig13663:5710..8060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1065
Cds size1065
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13663.2584.1prot_H-elongata_contig13663.2584.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13663 5710..8060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.0497758-CDS-H-elongata_contig13663:5709..57871622929811.0497758-CDS-H-elongata_contig13663:5709..5787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 5710..5787 +
1691679166.6310983-CDS-H-elongata_contig13663:5709..57871691679166.6310983-CDS-H-elongata_contig13663:5709..5787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 5710..5787 +
1622929811.0724702-CDS-H-elongata_contig13663:6298..64761622929811.0724702-CDS-H-elongata_contig13663:6298..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6299..6476 +
1691679166.639596-CDS-H-elongata_contig13663:6298..64761691679166.639596-CDS-H-elongata_contig13663:6298..6476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6299..6476 +
1622929811.0930586-CDS-H-elongata_contig13663:6784..68591622929811.0930586-CDS-H-elongata_contig13663:6784..6859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6785..6859 +
1691679166.6492748-CDS-H-elongata_contig13663:6784..68591691679166.6492748-CDS-H-elongata_contig13663:6784..6859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6785..6859 +
1622929811.1126616-CDS-H-elongata_contig13663:6961..76041622929811.1126616-CDS-H-elongata_contig13663:6961..7604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6962..7604 +
1691679166.6583781-CDS-H-elongata_contig13663:6961..76041691679166.6583781-CDS-H-elongata_contig13663:6961..7604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 6962..7604 +
1622929811.1302989-CDS-H-elongata_contig13663:7969..80601622929811.1302989-CDS-H-elongata_contig13663:7969..8060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 7970..8060 +
1691679166.6671617-CDS-H-elongata_contig13663:7969..80601691679166.6671617-CDS-H-elongata_contig13663:7969..8060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 7970..8060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13663.2584.1

>prot_H-elongata_contig13663.2584.1 ID=prot_H-elongata_contig13663.2584.1|Name=mRNA_H-elongata_contig13663.2584.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=355bp
TEARWRARAEGTISSQEVKLEQLKTELVAARQQGADLRHMEVENKDLKDR
IERQEVFQRRRMEKEKKERRSKSGLRASLSDPSGEYKAGGRDSVQLVPLP
PPMNERKNTGDVNSMGSGVRSAKVPTVAPRGRVDKEGGARGGGGGERRGV
RSVSPFARPFTVSSSSRGSAKFFSTPEYSTPEYSRNAEKENNVKGRRSTA
SGAETSCSSSGSNSSGSGSGRNEKRGHAGGCTGVSDVDGGRGDNRKANGA
GDTHAKDASAGKRNSQRAGSRGGDRAREKTSSGTGRSRPLESRKNMNVSK
SPAVEPSDSTQPSRGRWVNLPKECKRAVATKSAAVAAPRSSSLGKQTRAA
TGWR*
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mRNA from alignment at H-elongata_contig13663:5710..8060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13663.2584.1 ID=mRNA_H-elongata_contig13663.2584.1|Name=mRNA_H-elongata_contig13663.2584.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2351bp|location=Sequence derived from alignment at H-elongata_contig13663:5710..8060+ (Himanthalia elongata Himel1 dioecious)
ACGGAGGCTCGTTGGAGAGCGCGCGCCGAGGGTACGATCTCTTCCCAAGA
AGTGAAGCTTGAACAGCTAAAGACGGAGGTGCCGTGGTCGGACAAGCGCG
AAGTTCTCGGGATACAATACACCTGTTGCCGTACTGGCGCGCCTCGGCTC
GCCTCATGTTATGTTGTCTTGTGTTGTGAGGGAGATCCTCCCGATGAGAC
GGACGGCGGTGTGGTGATTCCAGCGTTGTGCGTGGTGATTCCAGCGTTGT
AGGTTTCCCCACCAGCTCTCGCTGCGGTGGGTTTGTTTCACGACCACCGG
ACAATGCCAGATCGAGTGCAAGAATGAAGCGTTTCTCCCCTTTTACTTTT
GCCTGTTCGTGATCCTCTTCGTTGCCTTGTGTGTGTTTGACTCCCACCAT
ACATCATACATGTATCCACCTTCTACAGACAGCACCCAAGTTTGAGTGTC
CTCTTTCATCTCTCCATCTCTTTCTCCTTCTCTCCCTCATCCGCTCTTTT
CCCATCCTTTGTTGTTGTTGTTATTGATGTTGTTCTACGGCCTCGCCTCT
GATGGAATACCTCATCGCGGCGGCGTTTGATGCCAATAGCTGGTAGCAGC
ACGGCAGCAAGGAGCGGATTTGCGTCACATGGAGGTCGAGAACAAGGACC
TCAAGGACCGGATAGAGAGGCAAGAGGTCTTTCAGAGGAGGAGAATGGAA
AAGGAGAAGAAGGAGAGGCGGTCGAAGTCGGGGCTTAGGGCATCACTCAG
CGACCCGTCTGGTGAGTGTTATTATTATTATTATTATTATTATATTTTTT
CAATGTTTTAACATCGACGATGACGGTGCACGTATTACCGTCATTCATAA
GGAGTATGTCGATATTGTTCACGACAGGTGATCGGCCCCGCCGGAGTGTT
GGTCCATTGGAGGTGTTATCTGACTTGTGGCGGTTAGCCTTGGCGGCATT
CTTGCCGTGTTTTTGTGATAATATCATGATGATATGTTAACATTTTTTTT
TGCCGTTTCTCTGTCGTCACTGTCGCGACTCTTCTGCTCAACCCTACCAC
ACCCCTCACACCCCTTACACCAAAGATAAAGCGGGCGGGCGCGATTCTGT
CCAGCTGGTACCCTTGCCCCCCCCGATGAACGAACGAAAGAACACTGGGG
GTGAAGACGTCCAAGAATGCAGTCAGGGCAACGACGGCAATAATGACAGT
GCCGGAACAGGGAGAGACACGCCTCAGCCTGCGCCCATTTCCTCTGCAGC
AGACGTCAACAGTATGGGGTCAGGAGTGCGTTCGGCGAAAGTGCCGACAG
TAGCTCCGAGGGGCAGAGTCGACAAGGAAGGCGGAGCCAGAGGCGGCGGT
GGTGGCGAACGCCGGGGAGTGCGTTCGGTGTCGCCGTTCGCTCGGCCTTT
TACGGTGTCCTCCTCTTCACGAGGCAGCGCTAAGTTTTTTTCTACTCCCG
AGTATTCTACTCCCGAGTACTCACGGAACGCCGAGAAAGAGAACAACGTT
AAGGGGCGCAGAAGTACCGCCTCCGGAGCTGAGACCAGCTGCAGCAGCAG
CGGCAGCAACAGCAGCGGTAGTGGTAGTGGTAGGAACGAGAAGCGCGGCC
ACGCGGGAGGCTGTACAGGCGTGAGCGATGTCGATGGAGGGCGAGGGGAC
AACCGGAAGGCTAATGGCGCTGGCGACACCCACGCGAAAGACGCCTCCGC
CGGAAAGCGCAACTCTCAGAGGGCGGGCTCCAGAGGCGGCGACAGGGCGC
GCGAGAAGACTTCGAGCGGGACGGGCAGGTCTCGACCCCTTGAGAGCAGG
AAAAATATGAACGTGTCGAAGTCGCCAGCGGTCGAACCGAGCGACAGCAC
GCAACCCTCTCGTGGCAGGTGGGTGAATTTGCCTAAGGAGTGCAAGTGTA
GTACGGGATGGCTGCCGTGCGGGGTTTAGTCGCCTTTTTCAGGGGGAGGA
GGAGCGCCTGTGCGACCGCTATGTTTGTTGAAAGTCTCCTGCCTAATCTC
TTACACCCACCCGAGCTCCTCCAAAATTGTTGAAACAAGCTCGAAGCGAA
TGCTCGTCAGGGTTAGGCACCGATATAAAGTCCATGGCCCCTTTTTGTTG
TCGATGATGTTATTCTTTGACCTCGCTGGTTGTCATAGGCATCCCACTAG
AGAGTCATGGTCGTGTAGTTCAAGAGTTCTAATACTGCATATCTAAGTTA
GATATATACTTTCCCTGTTGCTGCATCCTCTTGCTGCTGCGCTGCATACA
CGTCTTGAAGGCGGGCGGTGGCGACCAAATCGGCCGCTGTAGCGGCGCCG
CGCTCGTCAAGCCTGGGAAAGCAGACGCGCGCGGCGACGGGGTGGCGCTA
G
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Coding sequence (CDS) from alignment at H-elongata_contig13663:5710..8060+

>mRNA_H-elongata_contig13663.2584.1 ID=mRNA_H-elongata_contig13663.2584.1|Name=mRNA_H-elongata_contig13663.2584.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at H-elongata_contig13663:5710..8060+ (Himanthalia elongata Himel1 dioecious)
ACGGAGGCTCGTTGGAGAGCGCGCGCCGAGGGTACGATCTCTTCCCAAGA
AGTGAAGCTTGAACAGCTAAAGACGGAGACGGAGGCTCGTTGGAGAGCGC
GCGCCGAGGGTACGATCTCTTCCCAAGAAGTGAAGCTTGAACAGCTAAAG
ACGGAGCTGGTAGCAGCACGGCAGCAAGGAGCGGATTTGCGTCACATGGA
GGTCGAGAACAAGGACCTCAAGGACCGGATAGAGAGGCAAGAGGTCTTTC
AGAGGAGGAGAATGGAAAAGGAGAAGAAGGAGAGGCGGTCGAAGTCGGGG
CTTAGGGCATCACTCAGCGACCCGTCTGGTGAGTCTGGTAGCAGCACGGC
AGCAAGGAGCGGATTTGCGTCACATGGAGGTCGAGAACAAGGACCTCAAG
GACCGGATAGAGAGGCAAGAGGTCTTTCAGAGGAGGAGAATGGAAAAGGA
GAAGAAGGAGAGGCGGTCGAAGTCGGGGCTTAGGGCATCACTCAGCGACC
CGTCTGGTGAGTATAAAGCGGGCGGGCGCGATTCTGTCCAGCTGGTACCC
TTGCCCCCCCCGATGAACGAACGAAAGAACACTGGGGATAAAGCGGGCGG
GCGCGATTCTGTCCAGCTGGTACCCTTGCCCCCCCCGATGAACGAACGAA
AGAACACTGGGGACGTCAACAGTATGGGGTCAGGAGTGCGTTCGGCGAAA
GTGCCGACAGTAGCTCCGAGGGGCAGAGTCGACAAGGAAGGCGGAGCCAG
AGGCGGCGGTGGTGGCGAACGCCGGGGAGTGCGTTCGGTGTCGCCGTTCG
CTCGGCCTTTTACGGTGTCCTCCTCTTCACGAGGCAGCGCTAAGTTTTTT
TCTACTCCCGAGTATTCTACTCCCGAGTACTCACGGAACGCCGAGAAAGA
GAACAACGTTAAGGGGCGCAGAAGTACCGCCTCCGGAGCTGAGACCAGCT
GCAGCAGCAGCGGCAGCAACAGCAGCGGTAGTGGTAGTGGTAGGAACGAG
AAGCGCGGCCACGCGGGAGGCTGTACAGGCGTGAGCGATGTCGATGGAGG
GCGAGGGGACAACCGGAAGGCTAATGGCGCTGGCGACACCCACGCGAAAG
ACGCCTCCGCCGGAAAGCGCAACTCTCAGAGGGCGGGCTCCAGAGGCGGC
GACAGGGCGCGCGAGAAGACTTCGAGCGGGACGGGCAGGTCTCGACCCCT
TGAGAGCAGGAAAAATATGAACGTGTCGAAGTCGCCAGCGGTCGAACCGA
GCGACAGCACGCAACCCTCTCGTGGCAGGTGGGTGAATTTGCCTAAGGAG
TGCAAACGTCAACAGTATGGGGTCAGGAGTGCGTTCGGCGAAAGTGCCGA
CAGTAGCTCCGAGGGGCAGAGTCGACAAGGAAGGCGGAGCCAGAGGCGGC
GGTGGTGGCGAACGCCGGGGAGTGCGTTCGGTGTCGCCGTTCGCTCGGCC
TTTTACGGTGTCCTCCTCTTCACGAGGCAGCGCTAAGTTTTTTTCTACTC
CCGAGTATTCTACTCCCGAGTACTCACGGAACGCCGAGAAAGAGAACAAC
GTTAAGGGGCGCAGAAGTACCGCCTCCGGAGCTGAGACCAGCTGCAGCAG
CAGCGGCAGCAACAGCAGCGGTAGTGGTAGTGGTAGGAACGAGAAGCGCG
GCCACGCGGGAGGCTGTACAGGCGTGAGCGATGTCGATGGAGGGCGAGGG
GACAACCGGAAGGCTAATGGCGCTGGCGACACCCACGCGAAAGACGCCTC
CGCCGGAAAGCGCAACTCTCAGAGGGCGGGCTCCAGAGGCGGCGACAGGG
CGCGCGAGAAGACTTCGAGCGGGACGGGCAGGTCTCGACCCCTTGAGAGC
AGGAAAAATATGAACGTGTCGAAGTCGCCAGCGGTCGAACCGAGCGACAG
CACGCAACCCTCTCGTGGCAGGTGGGTGAATTTGCCTAAGGAGTGCAAGC
GGGCGGTGGCGACCAAATCGGCCGCTGTAGCGGCGCCGCGCTCGTCAAGC
CTGGGAAAGCAGACGCGCGCGGCGACGGGGTGGCGCTAGGCGGGCGGTGG
CGACCAAATCGGCCGCTGTAGCGGCGCCGCGCTCGTCAAGCCTGGGAAAG
CAGACGCGCGCGGCGACGGGGTGGCGCTAG
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