prot_H-elongata_contig136.2539.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig136.2539.1
Unique Nameprot_H-elongata_contig136.2539.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length171
Homology
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BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-8
Identity = 43/90 (47.78%), Postives = 49/90 (54.44%), Query Frame = 0 
Query:   25 SKRQQMLEYSASRRLSVERPPKTKEKAP-----------------------RDSNWAEKQAAVFKEWLNFTLVGAEQLRHGVGHRNIDGE 91
            +KRQQML+YS SRRLS+ +P   +EK+                         D  WAEKQ A F  WLNFTLVGAEQLRHG G    DGE
Sbjct:  221 NKRQQMLKYSKSRRLSL-KPGHKREKSDGXXXXXXXXXXXXSKATLLRKSLSDKGWAEKQTAGFTNWLNFTLVGAEQLRHGAGD---DGE 306
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BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.630e-7
Identity = 41/91 (45.05%), Postives = 48/91 (52.75%), Query Frame = 0 
Query:   25 SKRQQMLEYSASRRLSVERPPKTKE------------------------KAPRDSNWAEKQAAVFKEWLNFTLVGAEQLRHGVGHRNIDGE 91
            +KRQQML+YS SRRL+++   K  +                        K+  D  WAEKQ A F  WLNFTLVGAEQLRHG G    DGE
Sbjct:  106 NKRQQMLKYSKSRRLALKPGHKRGKVGSCSDGGASAGEEGGGSKATLLRKSLSDKGWAEKQTAGFTNWLNFTLVGAEQLRHGAGD---DGE 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLN9_ECTSI1.040e-847.78Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE1.630e-745.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136contigH-elongata_contig136:7491..8620 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136.2539.1mRNA_H-elongata_contig136.2539.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig136 7422..8626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig136.2539.1 ID=prot_H-elongata_contig136.2539.1|Name=mRNA_H-elongata_contig136.2539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MSSAPKPSKPKEFPRPPSPYSGTMSKRQQMLEYSASRRLSVERPPKTKEK
APRDSNWAEKQAAVFKEWLNFTLVGAEQLRHGVGHRNIDGEGNGDSNAET
GRGYPKNHRRANGGSSTLGSDAAHASDAAFPFGGDDRGLRCGRRQGARWH
YLAEEGPSVACGRNPEPCPH*
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