mRNA_H-elongata_contig136.2539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136.2539.1
Unique NamemRNA_H-elongata_contig136.2539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-11
Identity = 42/56 (75.00%), Postives = 44/56 (78.57%), Query Frame = 2 
Query:  419 RLEATQRMRAMRLFHSAGMIEACGAVADRARDGTISLRRDQVLHADVTLSRALIDL 586
            R EA QRMRAMRLF S  +  A  AVADRA DGTISLRRD+VLHADV LS ALIDL
Sbjct:  331 RHEARQRMRAMRLFRSVEVRTATEAVADRAYDGTISLRRDRVLHADVGLSGALIDL 386
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BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.930e-11
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 2 
Query:  419 RLEATQRMRAMRLFHSAGMIEACGAVADRARDGTISLRRDQVLHADVTLSRALIDL 586
            R EA QR+RAMRLF S  +  A  AVADRA DGTISLRRD+VLHADV LS ALIDL
Sbjct:  218 RHEARQRVRAMRLFRSVEVRTATEAVADRAYDGTISLRRDRVLHADVGLSGALIDL 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLN9_ECTSI1.750e-1175.00Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE5.930e-1173.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136contigH-elongata_contig136:7422..8626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size588
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136.2539.1prot_H-elongata_contig136.2539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136 7491..8620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.1771708-UTR-H-elongata_contig136:7421..74901622929807.1771708-UTR-H-elongata_contig136:7421..7490Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 7422..7490 +
1691679164.9537416-UTR-H-elongata_contig136:7421..74901691679164.9537416-UTR-H-elongata_contig136:7421..7490Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 7422..7490 +
1622929807.2316873-UTR-H-elongata_contig136:8620..86261622929807.2316873-UTR-H-elongata_contig136:8620..8626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 8621..8626 +
1691679164.992941-UTR-H-elongata_contig136:8620..86261691679164.992941-UTR-H-elongata_contig136:8620..8626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136 8621..8626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.1970396-CDS-H-elongata_contig136:7490..76401622929807.1970396-CDS-H-elongata_contig136:7490..7640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 7491..7640 +
1691679164.9675753-CDS-H-elongata_contig136:7490..76401691679164.9675753-CDS-H-elongata_contig136:7490..7640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 7491..7640 +
1622929807.2091036-CDS-H-elongata_contig136:7933..81321622929807.2091036-CDS-H-elongata_contig136:7933..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 7934..8132 +
1691679164.977172-CDS-H-elongata_contig136:7933..81321691679164.977172-CDS-H-elongata_contig136:7933..8132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 7934..8132 +
1622929807.2197309-CDS-H-elongata_contig136:8456..86201622929807.2197309-CDS-H-elongata_contig136:8456..8620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 8457..8620 +
1691679164.9850402-CDS-H-elongata_contig136:8456..86201691679164.9850402-CDS-H-elongata_contig136:8456..8620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136 8457..8620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136.2539.1

>prot_H-elongata_contig136.2539.1 ID=prot_H-elongata_contig136.2539.1|Name=mRNA_H-elongata_contig136.2539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MSSAPKPSKPKEFPRPPSPYSGTMSKRQQMLEYSASRRLSVERPPKTKEK
APRDSNWAEKQAAVFKEWLNFTLVGAEQLRHGVGHRNIDGEGNGDSNAET
GRGYPKNHRRANGGSSTLGSDAAHASDAAFPFGGDDRGLRCGRRQGARWH
YLAEEGPSVACGRNPEPCPH*
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mRNA from alignment at H-elongata_contig136:7422..8626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136.2539.1 ID=mRNA_H-elongata_contig136.2539.1|Name=mRNA_H-elongata_contig136.2539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig136:7422..8626+ (Himanthalia elongata Himel1 dioecious)
CCGTATCCTCGACCATGATGCGTCCTTGTTGGCGTGGTCTGCCAGACAAA
CAAGGAAAACCCCCGCACCATGAGCTCGGCGCCGAAACCGTCGAAGCCGA
AGGAATTTCCGAGACCGCCTTCCCCGTACTCGGGCACAATGAGCAAGCGG
CAGCAAATGCTCGAGTACTCAGCCTCTAGGAGGCTTTCGGTCGAGCGTCC
CCCCAAAACAAAGGAAAAGGTGAAGCCTCCATCCGCGTCACCATGCTTCT
TTTTTTACAACATTCAATGATGGACGCATGGTACGCTTCCGAGGCTTGTC
AATTTTGTAATGGCCGGCTTGGAGTCGACCACTGCCGTCAGACTGGTAGA
TTCATCGTCTCCACGATTTGTTGGACAGATTCGCCGTGGAATTTTTTTTC
CCGTTTGGTTCCATGTCTAACCCCCTCTGCACCCAAGGGAACACGCAATA
ATACACAGGCAGTACTCCGTGTCATGTCACTGTCATATATTGCCCTACTA
TCATATATGAAGGCTCCGCGCGACAGCAACTGGGCCGAGAAGCAGGCAGC
GGTGTTCAAGGAGTGGCTCAACTTTACGCTGGTCGGTGCTGAGCAGCTGC
GGCACGGCGTCGGTCACCGCAATATAGATGGCGAAGGGAACGGAGATAGC
AACGCCGAGACGGGCAGGGGGTATCCAAAGAATCATAGGAGAGCGAACGG
CGGATCGTCGAGTCCGCTGAAGGCGATGATTGCCATGGTGAGAGGCTAAG
CTTGGGGGGGTGTTTTCGTTCATTTCGTGTAGCCGATATTTTGTTGACAC
GGCCGCGTGTGGTGGATATTTGGTGGGCAGTGCAGGTAGTTGGAGTATTC
CTATAATAGTACAGTAGTAAGAGGTGCGCTCTATCTGGCCGCTGAATTTC
TTACCACAAATCGGTCGCAAAGTATGCCGGTGAACAATACCTTCAAATAG
TATTAATAGTAACGTAGTGGTGGGACAAACTAATAGGTATATCCCTTCTT
CCCTCCACCCGCTCGAAAAACAACCAAACGAACAGCGCTTGGAAGCGACG
CAGCGCATGCGAGCGATGCGGCTTTTCCATTCGGCGGGGATGATCGAGGC
CTGCGGTGCGGTCGCAGACAGGGCGCGCGATGGCACTATCTCGCTGAGGA
GGGACCAAGTGTTGCATGCGGACGTAACCCTGAGCCGTGCCCTCATTGAT
CTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig136:7422..8626+

>mRNA_H-elongata_contig136.2539.1 ID=mRNA_H-elongata_contig136.2539.1|Name=mRNA_H-elongata_contig136.2539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig136:7422..8626+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTCGGCGCCGAAACCGTCGAAGCCGAAGGAATTTCCGAGACCGCC
TTCCCCGTACTCGGGCACAATGAGCAAGCGGCAGCAAATGCTCGAGTACT
CAGCCTCTAGGAGGCTTTCGGTCGAGCGTCCCCCCAAAACAAAGGAAAAG
ATGAGCTCGGCGCCGAAACCGTCGAAGCCGAAGGAATTTCCGAGACCGCC
TTCCCCGTACTCGGGCACAATGAGCAAGCGGCAGCAAATGCTCGAGTACT
CAGCCTCTAGGAGGCTTTCGGTCGAGCGTCCCCCCAAAACAAAGGAAAAG
GCTCCGCGCGACAGCAACTGGGCCGAGAAGCAGGCAGCGGTGTTCAAGGA
GTGGCTCAACTTTACGCTGGTCGGTGCTGAGCAGCTGCGGCACGGCGTCG
GTCACCGCAATATAGATGGCGAAGGGAACGGAGATAGCAACGCCGAGACG
GGCAGGGGGTATCCAAAGAATCATAGGAGAGCGAACGGCGGATCGTCGAG
CTCCGCGCGACAGCAACTGGGCCGAGAAGCAGGCAGCGGTGTTCAAGGAG
TGGCTCAACTTTACGCTGGTCGGTGCTGAGCAGCTGCGGCACGGCGTCGG
TCACCGCAATATAGATGGCGAAGGGAACGGAGATAGCAACGCCGAGACGG
GCAGGGGGTATCCAAAGAATCATAGGAGAGCGAACGGCGGATCGTCGACG
CTTGGAAGCGACGCAGCGCATGCGAGCGATGCGGCTTTTCCATTCGGCGG
GGATGATCGAGGCCTGCGGTGCGGTCGCAGACAGGGCGCGCGATGGCACT
ATCTCGCTGAGGAGGGACCAAGTGTTGCATGCGGACGTAACCCTGAGCCG
TGCCCTCATTGACGCTTGGAAGCGACGCAGCGCATGCGAGCGATGCGGCT
TTTCCATTCGGCGGGGATGATCGAGGCCTGCGGTGCGGTCGCAGACAGGG
CGCGCGATGGCACTATCTCGCTGAGGAGGGACCAAGTGTTGCATGCGGAC
GTAACCCTGAGCCGTGCCCTCATTGA
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