prot_H-elongata_contig135311.2495.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig135311.2495.1
Unique Nameprot_H-elongata_contig135311.2495.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length386
Homology
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 9.720e-66
Identity = 137/413 (33.17%), Postives = 218/413 (52.78%), Query Frame = 0
Query:    5 MIAALGWEAR----QLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 386
            M+AAL  E        DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GG+++  S   + +D + +E+  + P+RE+VG+LMW AT  RPDI+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL ++V E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+     + H  F+
Sbjct:   47 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 3.180e-64
Identity = 135/414 (32.61%), Postives = 220/414 (53.14%), Query Frame = 0
Query:    5 MIAALGWEA----RQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 386
            ++AA+  E     R  D+  A+++++++ED+++ LPE        +  L K++YGL  A   W + +       GF    AD CVFR I  G VVV +VV+VDD+    E ER + Q  RDL +  P+K+LG+  +Y  C   RD +AGTLK  Q    +          GK +      +  +EF++  ++   P+RE++G+LMW AT  RPDI+ A   +A++  +P   HWR+    L Y+ RT DLGIT+ R    G  +  +++ADY +    RRSVSGG VM  GG +SWFSR QK    +++++EY +LA+++ E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ +    + I +V S    AD LTK++     + H  ++
Sbjct:   23 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 218 bits (555), Expect = 1.310e-62
Identity = 139/412 (33.74%), Postives = 214/412 (51.94%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAA----------TIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQM------------------------AKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 380
            LS+  A G+   QLDVD A+L A+++ED+Y+E PE  +    +V  L KA+YGL  AG  W   +       GF+   +D C++     G     I +YVDD++V   T+   ++  + + + F IK+LG   + L   I+ DR    L  +Q   ++T                      LSK+D P+ D +  EM + PYR ++G L + A   RPDI+FA   L++F +NPGP HW +A + L+YL  TRD GI+YG +  E T +  + +AD+GT  D RRSVSG  +MM GG + + ++ Q   A +SS++EY AL+    E+ +++ M                        A N     RT+H+ I++H VRD +   V+++ YV +    ADILTKS+  K  +
Sbjct:   91 LSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTY-ICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.520e-62
Identity = 135/414 (32.61%), Postives = 220/414 (53.14%), Query Frame = 0
Query:    5 MIAALGWEA----RQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 386
            ++AA+  E     R  D+  A+++++++ED+++ LPE        +  L K++YGL  A   W + +       GF    AD CVFR I  G VVV +VV+VDD+    E ER + Q  RDL +  P+K+LG+  +Y  C   RD +AGTLK  Q    +          GK +      +  +EF++  ++   P+RE++G+LMW AT  RPDI+ A   +A++  +P   HWR+    L Y+ RT DLGIT+ R    G  +  +++ADY +    RRSVSGG VM  GG +SWFSR QK    +++++EY +LA+++ E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ +    + I +V S    AD LTK++     + H  ++
Sbjct:  197 LLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.040e-61
Identity = 137/413 (33.17%), Postives = 218/413 (52.78%), Query Frame = 0
Query:    5 MIAALGWEAR----QLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 386
            M+AAL  E        DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GG+++  S   + +D + +E+  + P+RE+VG+LMW AT  RPDI+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL ++V E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+     + H  F+
Sbjct: 1383 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 1794          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.820e-61
Identity = 136/409 (33.25%), Postives = 216/409 (52.81%), Query Frame = 0
Query:    5 MIAALGWEAR----QLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKH 382
            M+AAL  E        DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GG+++  S   + +D + +E+  + P+RE+VG+LMW AT  RPDI+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL ++V E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+     + H
Sbjct: 1169 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESH 1576          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 5.140e-61
Identity = 136/409 (33.25%), Postives = 216/409 (52.81%), Query Frame = 0
Query:    5 MIAALGWEAR----QLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKH 382
            M+AAL  E        DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GG+++  S   + +D + +E+  + P+RE+VG+LMW AT  RPDI+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL ++V E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+     + H
Sbjct: 1237 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESH 1644          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.360e-60
Identity = 131/414 (31.64%), Postives = 222/414 (53.62%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTA----------ATIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWF-SRIQKVTAAASSKSEYGALAEMVNELCFLQQ------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 380
            VLS++ A+ +   QLD D A+  ++++E +++E+P    ++   +  L KA+YGL  A   W   +       GF+   AD CV+ ++     V V + YVDD+++A++T  +  +    L S+F +K+LGEA + L   I  DR  GTL   Q + +             A +     G  LSK+ SP TDAE E+MR  PY+ ++G+L++  T  RPD+++   QL++F +NPG  HW++A + L+YL  T+D GI Y    G+   L  + +AD+G+  D RRSVSG  +MM GGA   F S+ Q+  A +S+++EY AL+    E+ + +                         +A N   + RT+ V I++H + + +   ++ ++YV + +  AD+LTK++  K ++
Sbjct:    7 VLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVCL-YVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAV-LEVYTDADWGSNLDGRRSVSG-IMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKRVDIRHHYIGENVARDIITVDYVGTEDQLADLLTKALGTKRLK 417          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.730e-60
Identity = 138/413 (33.41%), Postives = 215/413 (52.06%), Query Frame = 0
Query:    5 MIAALGWEAR----QLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 386
            M+AAL  E        DV+ A++ +E+EED+Y+ LP+        +  L K++YGL  A   W   ++      GF+   AD CVFR I  G VV+++VV+VDD+    E ER ++    DL  S P+K+LGE  +Y  C   R++  G L   Q       A      GGK++  S   + +D + +E+    P+RE+VG+LMW AT  RP I+ A   +A++  +P   HW +A   L Y  RT   GI++ R   EG  L  + +AD+ +    RRSVSGG V   GGA+SWFSR QK    +++++EY AL  M  E+ FL+Q                         +A+N  S+  ++H+ +++H +R+ ++   + + +V S   +AD LTKS+   T + H  F+
Sbjct:  517 MLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPGIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGXM-KEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKKISVIHVPSPYQRADFLTKSLPEDTFESHRDFV 927          
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6A4CLK4_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CLK4_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.910e-60
Identity = 141/414 (34.06%), Postives = 216/414 (52.17%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVF-RRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFD---------QHQCIQTAATIA-AAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQM------------------------AKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 380
            VLS+ AA  +   QLD D A+L +E+++ +Y+E+P    ++R     L KA+YGL  A   W+  +     G GF+   AD CV+ +R  +G + V +  YVDD+++A++T  +       L ++F +K+LG A + L   I  D  AGTLK           +H   + A  +    A G  LSK+ SP TDAE   MR  PYR ++G L++  T  RPDI+F   QL++F +NP   HW +A + L+YL  T   GI Y       T L A+ +AD+GT  D RRS SG  VM     + + S+ Q+  A +S+++EY AL+  V E+ + + M                          N     RT+HV I++H   + ++ G V++EYV +    ADILTK++  KT++
Sbjct:   91 VLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARGYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCL--YVDDMIIAAKTSEEIRDVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKPTRYIDDVVEHFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPEKQHWNAAVRVLRYLKSTLQHGIIYHGGTHTVT-LKAYSDADWGTSLDDRRSGSGVMVMTGNAPVVFKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQRNATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFTTENVERGTVKVEYVDTKNQLADILTKALGTKTLK 501          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE9.720e-6633.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.180e-6432.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL1.310e-6233.74Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5KQB8_9PHAE1.520e-6232.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.040e-6133.17Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE4.820e-6133.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE5.140e-6133.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3J8V8_9STRA1.360e-6031.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9U0_9PHAE3.730e-6033.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4CLK4_9STRA4.910e-6034.06Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..162
e-value: 1.1E-24
score: 87.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 183..326
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 183..326
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 15..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135311contigH-elongata_contig135311:43..1299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135311.2495.1mRNA_H-elongata_contig135311.2495.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig135311 13..1299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig135311.2495.1 ID=prot_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=386bp
MVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLK
KAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVV
YVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGT
LKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGT
LMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGIT
YGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKV
TAAASSKSEYGALAEMVNELCFLQQMAKNRFSSRRTRHVGIKNHIVRDAI
DGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like