prot_H-elongata_contig13511.2481.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13511.2481.1
Unique Nameprot_H-elongata_contig13511.2481.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
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BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.130e-16
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    1 MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENEVNVHVAVQADGTEILVEGDFVRLVRAPVAS 74
            MKLAGG G+AG LAAVVES G C Y IV   GG G   G  E  V VHV V ADG+E+ +EGDFVRLVR P A+
Sbjct:  356 MKLAGGQGYAGELAAVVESTGCCTYRIVV--GGGGHHRGAGEGGVGVHVVVHADGSEVWLEGDFVRLVRPPAAA 427
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BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 0 
Query:    1 MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENE--VNVHVAVQADGTEILVEGDFVRLVRAP 71
            M+LA G G+AG LA VVES GGC Y IV  +GG    + RR  E  V VHV V ADG+E+ +EG FVRLVR P
Sbjct:  451 MELAEGQGYAGELAIVVESTGGCTYRIVVGDGG----HHRRAGEGGVGVHVVVHADGSEVWLEGGFVRLVRPP 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL70_ECTSI2.130e-1662.16DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVD6_9PHAE2.470e-1257.53DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..74
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13511contigH-elongata_contig13511:3100..3589 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13511.2481.1mRNA_H-elongata_contig13511.2481.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13511 3100..3589 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13511.2481.1 ID=prot_H-elongata_contig13511.2481.1|Name=mRNA_H-elongata_contig13511.2481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENEVNVHVA
VQADGTEILVEGDFVRLVRAPVAS
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