mRNA_H-elongata_contig13511.2481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13511.2481.1
Unique NamemRNA_H-elongata_contig13511.2481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.130e-16
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENEVNVHVAVQADGTEILVEGDFVRLVRAPVAS 222
            MKLAGG G+AG LAAVVES G C Y IV   GG G   G  E  V VHV V ADG+E+ +EGDFVRLVR P A+
Sbjct:  356 MKLAGGQGYAGELAAVVESTGCCTYRIVV--GGGGHHRGAGEGGVGVHVVVHADGSEVWLEGDFVRLVRPPAAA 427
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BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.470e-12
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENE--VNVHVAVQADGTEILVEGDFVRLVRAP 213
            M+LA G G+AG LA VVES GGC Y IV  +GG    + RR  E  V VHV V ADG+E+ +EG FVRLVR P
Sbjct:  451 MELAEGQGYAGELAIVVESTGGCTYRIVVGDGG----HHRRAGEGGVGVHVVVHADGSEVWLEGGFVRLVRPP 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13511.2481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL70_ECTSI2.130e-1662.16DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KVD6_9PHAE2.470e-1257.53DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13511contigH-elongata_contig13511:3100..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.2185295-CDS-H-elongata_contig13511:3099..31771622929802.2185295-CDS-H-elongata_contig13511:3099..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13511 3100..3177 -
1691679163.0169098-CDS-H-elongata_contig13511:3099..31771691679163.0169098-CDS-H-elongata_contig13511:3099..3177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13511 3100..3177 -
1622929802.2440875-CDS-H-elongata_contig13511:3445..35891622929802.2440875-CDS-H-elongata_contig13511:3445..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13511 3446..3589 -
1691679163.0263653-CDS-H-elongata_contig13511:3445..35891691679163.0263653-CDS-H-elongata_contig13511:3445..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13511 3446..3589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13511.2481.1prot_H-elongata_contig13511.2481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13511 3100..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13511.2481.1

>prot_H-elongata_contig13511.2481.1 ID=prot_H-elongata_contig13511.2481.1|Name=mRNA_H-elongata_contig13511.2481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MKLAGGTGFAGPLAAVVESFGGCIYSIVAVEGGAGAFNGRRENEVNVHVA
VQADGTEILVEGDFVRLVRAPVAS
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mRNA from alignment at H-elongata_contig13511:3100..3589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13511.2481.1 ID=mRNA_H-elongata_contig13511.2481.1|Name=mRNA_H-elongata_contig13511.2481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=490bp|location=Sequence derived from alignment at H-elongata_contig13511:3100..3589- (Himanthalia elongata Himel1 dioecious)
ATGAAGCTTGCGGGGGGCACTGGCTTCGCGGGGCCGTTGGCTGCGGTCGT
TGAGTCTTTCGGAGGATGCATCTACAGTATTGTAGCTGTTGAGGGAGGTG
CGGGTGCCTTCAACGGAAGAAGAGAAAATGAAGTCAACGTTCACGTAAGG
GGCTATTGTAGGTAACTGTTTTATCACTTTGCCTCACACGGACGACTCGG
AACTTCACCATGCTAATGCACGCGCTTTGCTTATTGTTTGTTTGTGTCTA
AGAGGGTGTGAGACAGCCGATGGGTCACCCCAGGCCCAAAACTCGACGGC
GTCGCGCTTGCGCGCCCGCAACCACTAGTGCTTGCTCAAATCGGGTCACG
ACAGAAGCCAACATATCGCTTCCCCCCTGATCACGTCCCATGGGTGCTGC
GGTGCCGAACAGGTTGCGGTCCAAGCGGACGGAACGGAGATTTTGGTAGA
GGGCGACTTCGTGCGTCTTGTGCGCGCTCCTGTTGCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig13511:3100..3589-

>mRNA_H-elongata_contig13511.2481.1 ID=mRNA_H-elongata_contig13511.2481.1|Name=mRNA_H-elongata_contig13511.2481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig13511:3100..3589- (Himanthalia elongata Himel1 dioecious)
ATGAAGCTTGCGGGGGGCACTGGCTTCGCGGGGCCGTTGGCTGCGGTCGT
TGAGTCTTTCGGAGGATGCATCTACAGTATTGTAGCTGTTGAGGGAGGTG
CGGGTGCCTTCAACGGAAGAAGAGAAAATGAAGTCAACGTTCACATGAAG
CTTGCGGGGGGCACTGGCTTCGCGGGGCCGTTGGCTGCGGTCGTTGAGTC
TTTCGGAGGATGCATCTACAGTATTGTAGCTGTTGAGGGAGGTGCGGGTG
CCTTCAACGGAAGAAGAGAAAATGAAGTCAACGTTCACGTTGCGGTCCAA
GCGGACGGAACGGAGATTTTGGTAGAGGGCGACTTCGTGCGTCTTGTGCG
CGCTCCTGTTGCTTCCGTTGCGGTCCAAGCGGACGGAACGGAGATTTTGG
TAGAGGGCGACTTCGTGCGTCTTGTGCGCGCTCCTGTTGCTTCC
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