prot_H-elongata_contig133841.2403.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig133841.2403.1
Unique Nameprot_H-elongata_contig133841.2403.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.060e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    2 RAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 82
            R E  G +  GTF  Q    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct: 1389 RKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 1466          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.450e-14
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    2 RAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 82
            R E  G +  GTF  +    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct: 1271 RKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 1347          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.350e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    2 RAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 82
            R E  G +  GTF  Q    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+ ETF+  PS++SI++  AIA
Sbjct: 1503 RKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIA 1580          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.260e-14
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   11 TGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 82
            + +  G+    G NV++AKW+FS+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct:  134 SSSHGGRDQARGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 205          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A4Q6CQJ4_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A4Q6CQJ4_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 2.130e-13
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 0
Query:    1 MRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 81
            +  EL  HD   T+     PA   ++T KW+F+ K D+ G I R KARLVARGF  +  VD+++TFA    + S++  +AI
Sbjct:   18 IAVELAAHDSNKTWIEVERPANARILTTKWVFALKRDKQGNIERHKARLVARGFEQRPGVDFYQTFAPVAKLESVRALLAI 98          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.150e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   16 GQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIA 82
            G+    G NV++AKW++S+K D  G+  RAKARLVARGF  +  VD+FETF+  PS++SI++  AIA
Sbjct:  814 GRDKARGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIA 880          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A6H5JKW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.580e-13
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 0
Query:    1 MRAELEGHDQTGTFSGQS-VPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 81
            M  EL+GH +TGTFS  S +P G   ++AKWIFS KT+  G I   KAR+VARGF     VD+  + +A PS  SIK  +A+
Sbjct:  220 MTKELDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAV 301          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A438DRH1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DRH1_VITVI)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    1 MRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAI 81
            M+ E++   + G +    +P GV +++ KWIF  K D  G I R KARLVA+GF  K C+DY ETF++  S  S ++ MA+
Sbjct:  188 MKEEMKSMKENGVWDLVELPEGVKLISCKWIFKTKRDSKGNIVRYKARLVAKGFTQKECIDYKETFSSVSSNDSFRIIMAL 268          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A8D8C7P3_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8C7P3_CULPI)

HSP 1 Score: 66.6 bits (161), Expect = 6.660e-12
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0
Query:    1 MRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIAV 83
            +R EL    +  T+    +P G  V+T+KW+F  K D++G + R KARLVARGF     VDY +TFA    +S+++  +A+ +
Sbjct:   57 VRDELNSLTENQTWDVVDLPRGAKVITSKWVFKKKVDKNGDLERLKARLVARGFQQTASVDYHDTFAPVAKLSTVRFLLAVGI 139          
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Match: A0A5N6LND4_9ASTR (Non-specific serine/threonine protein kinase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LND4_9ASTR)

HSP 1 Score: 69.3 bits (168), Expect = 6.710e-12
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    4 ELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLVARGFGPKYCVDYFETFAATPSVSSIKVAMAIAV 83
            E++   +  T+     PAGVN++T KW++  K   DG + R KARLVARGF  KY +DY +TF+    +++I+V +A+A+
Sbjct:  521 EVQALQRNQTWELVPQPAGVNLVTCKWVYKVKRRADGSVDRFKARLVARGFSQKYGLDYEDTFSPVAKLTTIRVILAVAI 600          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133841.2403.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAC2_9PHAE7.060e-1550.62Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KBJ6_9PHAE2.450e-1449.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE3.350e-1449.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE4.260e-1450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q6CQJ4_9GAMM2.130e-1340.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV09_9PHAE2.150e-1352.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW3_9PHAE8.580e-1348.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438DRH1_VITVI1.060e-1241.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A8D8C7P3_CULPI6.660e-1238.55Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A5N6LND4_9ASTR6.710e-1241.25Non-specific serine/threonine protein kinase n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 18..83
e-value: 8.7E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 19..82
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133841contigH-elongata_contig133841:1109..1357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133841.2403.1mRNA_H-elongata_contig133841.2403.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig133841 1097..1357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig133841.2403.1 ID=prot_H-elongata_contig133841.2403.1|Name=mRNA_H-elongata_contig133841.2403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MRAELEGHDQTGTFSGQSVPAGVNVMTAKWIFSFKTDRDGFITRAKARLV
ARGFGPKYCVDYFETFAATPSVSSIKVAMAIAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like