prot_H-elongata_contig132736.2341.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132736.2341.1
Unique Nameprot_H-elongata_contig132736.2341.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
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BLAST of mRNA_H-elongata_contig132736.2341.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.910e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:    1 YITEIATEAQDYADHAGRAKIGLEDARLAARKKQDALVSGPLSRE 45
            Y  E+  +A+DYADHAGR  +G++D RLA RKKQDAL +GP SRE
Sbjct:   27 YTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSRE 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132736.2341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI3.910e-1062.22Transcription initiation factor TFIID subunit n=2 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10coord: 1..35
e-value: 1.6E-6
score: 30.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132736contigH-elongata_contig132736:1207..1341 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132736.2341.1mRNA_H-elongata_contig132736.2341.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132736 1207..1341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132736.2341.1 ID=prot_H-elongata_contig132736.2341.1|Name=mRNA_H-elongata_contig132736.2341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
YITEIATEAQDYADHAGRAKIGLEDARLAARKKQDALVSGPLSRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold