mRNA_H-elongata_contig132736.2341.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132736.2341.1
Unique NamemRNA_H-elongata_contig132736.2341.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132736.2341.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.910e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 YITEIATEAQDYADHAGRAKIGLEDARLAARKKQDALVSGPLSRE 135
            Y  E+  +A+DYADHAGR  +G++D RLA RKKQDAL +GP SRE
Sbjct:   27 YTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSRE 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132736.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI3.910e-1062.22Transcription initiation factor TFIID subunit n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132736contigH-elongata_contig132736:1207..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue8.2e-08
Seed eggNOG ortholog2880.D8LAZ7
Preferred nameTAF9
KEGG koko:K02868,ko:K03133,ko:K05030,ko:K14535
KEGG TC1.A.13.1
KEGG Pathwayko03010,ko03022,ko04924,ko04972,ko05168,map03010,map03022,map04924,map04972,map05168
KEGG ModuleM00177
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcriptional preinitiation complex assembly
EggNOG OGsCOG5094@1,KOG3334@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021,ko03036,ko04040
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.3817062-CDS-H-elongata_contig132736:1206..13411622929788.3817062-CDS-H-elongata_contig132736:1206..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132736 1207..1341 +
1691679157.8676908-CDS-H-elongata_contig132736:1206..13411691679157.8676908-CDS-H-elongata_contig132736:1206..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132736 1207..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132736.2341.1prot_H-elongata_contig132736.2341.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132736 1207..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132736.2341.1

>prot_H-elongata_contig132736.2341.1 ID=prot_H-elongata_contig132736.2341.1|Name=mRNA_H-elongata_contig132736.2341.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
YITEIATEAQDYADHAGRAKIGLEDARLAARKKQDALVSGPLSRE
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mRNA from alignment at H-elongata_contig132736:1207..1341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132736.2341.1 ID=mRNA_H-elongata_contig132736.2341.1|Name=mRNA_H-elongata_contig132736.2341.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig132736:1207..1341+ (Himanthalia elongata Himel1 dioecious)
TACATCACGGAGATCGCCACCGAAGCACAGGACTACGCGGATCACGCCGG
ACGGGCCAAGATTGGCTTGGAGGACGCGCGCCTAGCTGCGCGTAAGAAGC
AGGATGCTTTAGTCTCTGGGCCGCTGTCAAGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig132736:1207..1341+

>mRNA_H-elongata_contig132736.2341.1 ID=mRNA_H-elongata_contig132736.2341.1|Name=mRNA_H-elongata_contig132736.2341.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig132736:1207..1341+ (Himanthalia elongata Himel1 dioecious)
TACATCACGGAGATCGCCACCGAAGCACAGGACTACGCGGATCACGCCGG
ACGGGCCAAGATTGGCTTGGAGGACGCGCGCCTAGCTGCGCGTAAGAAGC
AGGATGCTTTAGTCTCTGGGCCGCTGTCAAGGGAGTACATCACGGAGATC
GCCACCGAAGCACAGGACTACGCGGATCACGCCGGACGGGCCAAGATTGG
CTTGGAGGACGCGCGCCTAGCTGCGCGTAAGAAGCAGGATGCTTTAGTCT
CTGGGCCGCTGTCAAGGGAG
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