prot_H-elongata_contig12872.2116.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12872.2116.1
Unique Nameprot_H-elongata_contig12872.2116.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length336
Homology
BLAST of mRNA_H-elongata_contig12872.2116.1 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.120e-69
Identity = 173/353 (49.01%), Postives = 207/353 (58.64%), Query Frame = 0
Query:    2 SQQLNVSLVRILKIEAQSNI--RSRFGGDSYDASSSPV-----TVERPSALHHHHETPPAVLVSVLVSVLHCPLHMGCFLQCPPNPCPSGGCP--------DQDERQR-CPAFSLASPACAATFPLRRCDVKGVGGAGAALLAAAAAVKGKGGVVGEEGISEGRISAEEVPRDERLRYRLLAHVLAEVLWEQLLLDTSGGGGVFTLGDTSRLIGTTLVAAAEEMKRNFISKAERSGV--------AFSGGGGGTGLE-----RRQEAAVVLVDRTLDLAAACSRGGSLLQRILSSLFRTGTVPNAATSSPSFA-----DWSPTASAHQQDVGVTLPALTPGLGVPAPARVPAR 320
            SQQL VSL R+LKI+AQS+   R RF   S  ++         T+   +A H       AV  +VLV++ H PLH+GCF Q        GG           Q + Q+ C AFSLASPACA  FPLRRCD +G                           + G +SAEEVPR ERLRYRLLAH L E LW+QLLLD SGGGGVFTLGDTSRLIGTT+ A AE++KR  + +    G         A SG GGG G +      R+EA+VVL+DR LD+AAA S GGSLLQRILSS+ RTGT  +A  ++PS       DWSP+A+AHQQDVGV LP LTPGLG+PA A    R
Sbjct:  143 SQQLKVSLERMLKIKAQSSSSGRRRFSKPSPSSTXXXXXXXTQTIATEAAPHLAAN---AVDPTVLVTIKHSPLHVGCFFQASTTITSGGGSSVDVDQPLDSQGQHQKGCSAFSLASPACARVFPLRRCDWEGXXXXXXXXXXXXXXXXXXX-XXXXXXETRGHVSAEEVPRGERLRYRLLAHTLVEALWDQLLLDVSGGGGVFTLGDTSRLIGTTVAAVAEDLKRVSLERPAPPGFGGEGGADSASSGRGGGFGSDGAGPAARREASVVLIDRNLDVAAAASHGGSLLQRILSSIDRTGTPNSAVPATPSSPEAVAIDWSPSAAAHQQDVGVVLPMLTPGLGLPARAAAVER 491          
BLAST of mRNA_H-elongata_contig12872.2116.1 vs. uniprot
Match: A0A6A3JAG4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAG4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.960e-5
Identity = 73/218 (33.49%), Postives = 93/218 (42.66%), Query Frame = 0
Query:   61 VSVLHCPLHMGCFLQCP-PNPCPSGGCPDQDERQRCPAFSLASPACAATFPLRRCDVKGVGGAGAALLAAAAAVKGKGGVVGEEGISEGR----ISAEEVPRDERLRYRLLAHVLAEVLWEQLLLDTSGGGGVFTLGDTSRLIGTTLVAAAEEMKRNFISKAERSGVAFSGGGGGTGLERRQEAAVVLVDRTLDLAAACSRGGSLLQRILSSLFRTGT 273
            V VLH PL++   L    P P PS              F L+   CAA FPL    V+          AAA+           EG+++ +    +    +P   R   RLLA+ LAEV     L D      +F LG TS  IG TL+    EM+                      L+ RQ AA+V+VDRT DLA  CS G SLL RIL+ L +T T
Sbjct:  182 VQVLHLPLNVVPLLSNKTPTPEPS-------------VFVLSHATCAAAFPLLLHQVED---------AAASPTSPTNRGTATEGLNKYKNVRDVLPVHIPSAFRRAMRLLAYTLAEVTLGARL-DVKER--IFALGATSLKIGHTLLRILNEMQEEET------------------LQGRQGAALVIVDRTSDLATPCSFGSSLLDRILALLPQTPT 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12872.2116.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK34_ECTSI2.120e-6949.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A3JAG4_9STRA2.960e-533.49Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12872contigH-elongata_contig12872:2639..6053 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12872.2116.1mRNA_H-elongata_contig12872.2116.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12872 2104..8268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12872.2116.1 ID=prot_H-elongata_contig12872.2116.1|Name=mRNA_H-elongata_contig12872.2116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=336bp
MSQQLNVSLVRILKIEAQSNIRSRFGGDSYDASSSPVTVERPSALHHHHE
TPPAVLVSVLVSVLHCPLHMGCFLQCPPNPCPSGGCPDQDERQRCPAFSL
ASPACAATFPLRRCDVKGVGGAGAALLAAAAAVKGKGGVVGEEGISEGRI
SAEEVPRDERLRYRLLAHVLAEVLWEQLLLDTSGGGGVFTLGDTSRLIGT
TLVAAAEEMKRNFISKAERSGVAFSGGGGGTGLERRQEAAVVLVDRTLDL
AAACSRGGSLLQRILSSLFRTGTVPNAATSSPSFADWSPTASAHQQDVGV
TLPALTPGLGVPAPARVPARDCGGSGTRGGCGRGG*
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