prot_H-elongata_contig12007.1551.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12007.1551.1
Unique Nameprot_H-elongata_contig12007.1551.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
[Close]
BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Match: D8LM95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM95_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.900e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0 
Query:    1 MPLGKRLDACEAMKQEGNQHMNSGRPGEACDTYEQALAIFWYLDNRNENWKTSGIKDEDIRE 62
            +PL +R+  C ++K EGN+ M +G P +AC  YEQALA+FWYL N N NWKTS IKDEDI E
Sbjct:   48 LPLEERVGECTSLKLEGNEEMRNGCPDKACQLYEQALAMFWYLKNHNINWKTSEIKDEDIEE 109
[Close]
BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Match: A0A7R9U5M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5M5_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.610e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0 
Query:    3 LGKRLDACEAMKQEGNQHMNS-GRPGEACDTYEQALAIFWYLDNRNENWKTSGIKDEDI 60
              +RL+    +K+EGN+   S G P E    YE ALAIF Y++N   +WK + I D+D+
Sbjct:   28 FAERLEVATRLKEEGNELFRSAGGPLECAMKYENALAIFRYIENTRPDWKKNCIDDDDM 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM95_ECTSI1.900e-1759.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U5M5_9STRA1.610e-540.68Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..61
e-value: 3.9E-6
score: 28.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12007contigH-elongata_contig12007:174..984 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12007.1551.1mRNA_H-elongata_contig12007.1551.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12007 174..1008 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12007.1551.1 ID=prot_H-elongata_contig12007.1551.1|Name=mRNA_H-elongata_contig12007.1551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MPLGKRLDACEAMKQEGNQHMNSGRPGEACDTYEQALAIFWYLDNRNENW
KTSGIKDEDIRE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf