mRNA_H-elongata_contig12007.1551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12007.1551.1
Unique NamemRNA_H-elongata_contig12007.1551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Match: D8LM95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM95_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.530e-18
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    4 QVREARAMPLGKRLDACEAMKQEGNQHMNSGRPGEACDTYEQALAIFWYLDNRNENWKTSGIKDEDIRE 210
            +V  AR +PL +R+  C ++K EGN+ M +G P +AC  YEQALA+FWYL N N NWKTS IKDEDI E
Sbjct:   41 KVLAARDLPLEERVGECTSLKLEGNEEMRNGCPDKACQLYEQALAMFWYLKNHNINWKTSEIKDEDIEE 109
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BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Match: A0A7R9U5M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5M5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.750e-6
Identity = 25/68 (36.76%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    4 QVREARAMPLGKRLDACEAMKQEGNQHMNS-GRPGEACDTYEQALAIFWYLDNRNENWKTSGIKDEDI 204
            ++++ R+    +RL+    +K+EGN+   S G P E    YE ALAIF Y++N   +WK + I D+D+
Sbjct:   19 ELQDKRSGTFAERLEVATRLKEEGNELFRSAGGPLECAMKYENALAIFRYIENTRPDWKKNCIDDDDM 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12007.1551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM95_ECTSI5.530e-1857.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U5M5_9STRA7.750e-636.76Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12007contigH-elongata_contig12007:174..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue7.3e-15
Seed eggNOG ortholog2880.D8LM95
EggNOG OGs2E1RR@1,2S91S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-05_001980.1
Exons2
Model size210
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12007.1551.1prot_H-elongata_contig12007.1551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12007 174..984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.2022092-CDS-H-elongata_contig12007:173..2541622929704.2022092-CDS-H-elongata_contig12007:173..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12007 174..254 -
1691679125.4359574-CDS-H-elongata_contig12007:173..2541691679125.4359574-CDS-H-elongata_contig12007:173..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12007 174..254 -
1622929704.2184353-CDS-H-elongata_contig12007:879..9841622929704.2184353-CDS-H-elongata_contig12007:879..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12007 880..984 -
1691679125.4483688-CDS-H-elongata_contig12007:879..9841691679125.4483688-CDS-H-elongata_contig12007:879..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12007 880..984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.231798-UTR-H-elongata_contig12007:984..10081622929704.231798-UTR-H-elongata_contig12007:984..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12007 985..1008 -
1691679125.4567513-UTR-H-elongata_contig12007:984..10081691679125.4567513-UTR-H-elongata_contig12007:984..1008Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12007 985..1008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12007.1551.1

>prot_H-elongata_contig12007.1551.1 ID=prot_H-elongata_contig12007.1551.1|Name=mRNA_H-elongata_contig12007.1551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MPLGKRLDACEAMKQEGNQHMNSGRPGEACDTYEQALAIFWYLDNRNENW
KTSGIKDEDIRE
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mRNA from alignment at H-elongata_contig12007:174..1008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12007.1551.1 ID=mRNA_H-elongata_contig12007.1551.1|Name=mRNA_H-elongata_contig12007.1551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at H-elongata_contig12007:174..1008- (Himanthalia elongata Himel1 dioecious)
GTCCAGGTGCGAGAAGCCCGTGCAATGCCCCTGGGAAAAAGGTTGGATGC
GTGCGAGGCGATGAAACAGGAAGGAAACCAACACATGAACAGCGGTCGAC
CGGGCGAGGCCTGCGACACGTATGAGCAGGTAAATGCGGTGTGACGCTGT
GAACGGATGAAAGCTTGGTTCTGGGGCTTGAGTCATTTTTTTTTTATGTT
GATCTGGCCTTGAGCTGTAAATATACTTTTCCTGCATGAGACGTGACGTG
AGGCGTGAACTTGTAAGAAGTATGCACGTTTTGCTGACGTAGGCGGTTTA
GATCCAGGGAGAAAATGTGGAAGAAAAAAGGGGCACCCGGTGGCAATATG
ACCACATACATCGGAGTGCGCCGCAAGACGTGAAGGTAGAAATATTGTGA
CATACTCTAGAGGCGGCATAGCAAGGGCTTCATTACTAATAAAATAGGAT
TATTCCGGCATGACCTGCTTCTAGAGGTGTTACCGACTTCATATTTTACT
CGTTCGACAAGTCGCATCGTTCTACCGTGTATGTGCGTCAATACAAGAAG
GTTGAAAATGGAAACCACCGCATCGCGAACACGCCTATGAAGCCAACATG
AGCCCGATGTACGGCATTAGCACAGTTGCGTAAAGCCACTCGACCCAGCT
CTTCTGGGCAAGCACTCCGAGTACAGTACATCAACCAATCGAGCGACTCT
ATCGCCCTAACGAGGCGTTCTAACCACGAAATGGCCTGAAACTGTCATCG
GCAGGCGTTGGCAATATTTTGGTACCTCGACAACCGCAATGAGAATTGGA
AAACGAGCGGCATCAAAGACGAGGATATCCGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig12007:174..1008-

>mRNA_H-elongata_contig12007.1551.1 ID=mRNA_H-elongata_contig12007.1551.1|Name=mRNA_H-elongata_contig12007.1551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig12007:174..1008- (Himanthalia elongata Himel1 dioecious)
ATGCCCCTGGGAAAAAGGTTGGATGCGTGCGAGGCGATGAAACAGGAAGG
AAACCAACACATGAACAGCGGTCGACCGGGCGAGGCCTGCGACACGTATG
AGCAGATGCCCCTGGGAAAAAGGTTGGATGCGTGCGAGGCGATGAAACAG
GAAGGAAACCAACACATGAACAGCGGTCGACCGGGCGAGGCCTGCGACAC
GTATGAGCAGGCGTTGGCAATATTTTGGTACCTCGACAACCGCAATGAGA
ATTGGAAAACGAGCGGCATCAAAGACGAGGATATCCGCGAAGCGTTGGCA
ATATTTTGGTACCTCGACAACCGCAATGAGAATTGGAAAACGAGCGGCAT
CAAAGACGAGGATATCCGCGAA
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