prot_H-elongata_contig12004.1549.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12004.1549.1
Unique Nameprot_H-elongata_contig12004.1549.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length331
Homology
BLAST of mRNA_H-elongata_contig12004.1549.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 5.860e-102
Identity = 184/297 (61.95%), Postives = 217/297 (73.06%), Query Frame = 0
Query:    1 CRFFFVLSRACLLRSAQCDDIEAYFGDVGSVSEIDLGSVIRVDCPANDDGGPLEEILIASGTSLTIKSTQDFVRFVNVKFTVEEGATLVFDIPITRFGPNSGDSEGGTGYMLDVYDDASVTFMGKFRASQIENIRSVFYNSGSIDFKGDSLFNNNGNVFRSNSNGXXXXXXXXXXXXXSWLALDLIGSDSFVRQMFSKTATFDNNAGNFDGATGCAVDNSEGTVIFRDDAYFSNHRCDEGSAVYNGGTMKFYGKVEFEGNNGQRVWGGGLRNGA-------GSILFKKAVQFNRNDA 290
            C    +   A  +RS +CDDI+AYFGDV SV+EIDLG++IRVDCP+NDD   L  I I SG +LT+KS + FVRFVN++F VEEGA+L+FD+P+TR GPNSG SEG   ++ DV +  S+TF GKFRASQ+ N+RSVFYN GSI+FK DSLFNNNGNVFRSN   XXXXXXXXXXXXX     +  G DSFVR  FSKTATF +NAG FDGA GCA+DN  GT IFRDDA FS+H CDEG+AV N G M+FYGK  F  N   R  GGG+ N A       G ++FK AVQFNRN A
Sbjct:    9 CALLALALMASTVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXN-DGEDSFVR--FSKTATFIDNAGFFDGAWGCAIDNG-GTAIFRDDAVFSDHDCDEGAAVSNTGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTA 301          
BLAST of mRNA_H-elongata_contig12004.1549.1 vs. uniprot
Match: A0A6H5KB90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB90_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.140e-60
Identity = 117/184 (63.59%), Postives = 145/184 (78.80%), Query Frame = 0
Query:   10 ACLLRSAQCDDIEAYFGDVGSVSEIDLGSVIRVDCPANDDGGPLEEILIASGTSLTIKSTQDFVRFVNVKFTVEEGATLVFDIPITRFGPNSG-DSEGGTGYMLDVYDDASVTFMGKFRASQIENIRSVFYNSGSIDFKGDSLFNNNGNVFRSNSNGXXXXXXXXXXXXXSWLALDLIGSDSFV 192
            A  +RS +CDDI+AYFGDV SV+EIDLG++IRVDCP+ DDG  L  I I SG +L +KS + FVRFVN++F VEEGA+L+FD+P+TR GPNS  D E  + ++ DV +  S+TF GKFR+SQ+ N+RSVFYN GSI+FK DSLFNNNGNVFR+N   XXXXXXXXXXXXX +LA+   G DSFV
Sbjct:   18 ASTVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSTDDGEELPYITIESGKTLAVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSVVDPESASDFVFDVAEGGSLTFNGKFRSSQVFNVRSVFYNRGSIEFKDDSLFNNNGNVFRNNEX-XXXXXXXXXXXXXXYLAIVNDGEDSFV 200          
BLAST of mRNA_H-elongata_contig12004.1549.1 vs. uniprot
Match: A0A6H5L091_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L091_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.510e-34
Identity = 111/298 (37.25%), Postives = 156/298 (52.35%), Query Frame = 0
Query:   15 SAQCDDIEAYFGDVGSVS---EIDLGSVIRVDCPA--NDDGGP--LEEILIASGTSLTIKSTQDFVRFVNVKFTVEEGATLVFDIPITRFGPNSGDSEGGTGYM---LDVYDDASVTFMGKFRASQIENIRSVFYNSGSIDFKGDSLFNNNGNVFRSNSNGXXXXXXXXXXXXXSWLALDLIGSDSFVRQMFSKTATFDNNAGNFDGATGCAVD--NSEGTVIFRDDAYFSNHRCDEGSAVYN-GGTMKFYGKVEFEGNNGQRVW---------GGGLRNGAGSILFKKAVQFNRNDA 290
            SA CDD++ Y G    ++   EIDL  V  V+C     D G    LE+I+I  G S+T+KS+  +VRFVN++F V+ GATLVFD+P T FGPN+   EG   Y    ++V + A+VTF+G   AS + N  + FYN GS++F+  +LF +   VF  N  G              + A+  I S  ++R  FSK   FD N+   D    C++   + E  ++ R DA F NH C  G A++   GT KFYGK  F  N+  +           GG +    G++ F  AVQFN N A
Sbjct:   19 SAACDDVDNYLGIPNPLTGDMEIDLEGVSSVECAEIETDAGNEILLEQIVIDGG-SVTLKSSS-YVRFVNIEFDVKPGATLVFDMPETYFGPNTARKEGTWYYNSFGMNVDEGATVTFVGGVVASDVSNAFTAFYNRGSMEFQETALFEDGTYVFYENQ-GTIKFRGDATFRNNRFHAIQNIFS-GYIR--FSKDVLFDGNSYETDIIGTCSLSCIDEESRIVVRGDAVFQNHNC-PGVALWQLYGTTKFYGKAYFNNNSRDKTTFDYNLDGNLGGAVVVSGGTMTFNGAVQFNDNSA 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12004.1549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHY2_ECTSI5.860e-10261.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB90_9PHAE4.140e-6063.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L091_9PHAE2.510e-3437.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..330
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.603
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 55..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12004contigH-elongata_contig12004:2042..6727 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12004.1549.1mRNA_H-elongata_contig12004.1549.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12004 2042..6727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12004.1549.1 ID=prot_H-elongata_contig12004.1549.1|Name=mRNA_H-elongata_contig12004.1549.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=331bp
CRFFFVLSRACLLRSAQCDDIEAYFGDVGSVSEIDLGSVIRVDCPANDDG
GPLEEILIASGTSLTIKSTQDFVRFVNVKFTVEEGATLVFDIPITRFGPN
SGDSEGGTGYMLDVYDDASVTFMGKFRASQIENIRSVFYNSGSIDFKGDS
LFNNNGNVFRSNSNGTLKFRGDAVFRNNSWLALDLIGSDSFVRQMFSKTA
TFDNNAGNFDGATGCAVDNSEGTVIFRDDAYFSNHRCDEGSAVYNGGTMK
FYGKVEFEGNNGQRVWGGGLRNGAGSILFKKAVQFNRNDATIGGGLVVTG
GEVTFQKAVKFESNQAAVNGGAFALLDGGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence