prot_H-elongata_contig11760.1375.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11760.1375.1
Unique Nameprot_H-elongata_contig11760.1375.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length185
Homology
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A5S6QHL1_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QHL1_TRIMR)

HSP 1 Score: 90.5 bits (223), Expect = 8.590e-18
Identity = 62/194 (31.96%), Postives = 103/194 (53.09%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R+ + + I Q  Y+E ++E F+++  + +  P  S +   SK      P E  E+S+ PY+ AVG LM+  T  RPD +     V +F E+PGPAH KAV   ++Y+  TK+  + Y        G++G +   L ++A+ DS +   +D+R   SG V +L     S  +R++   +  T +AEY
Sbjct:  437 IGLEIHRDRRNKSIAIGQKAYIERILEKFNMQDCKPVACPWESSMK-LSKEMSPTTPDESKEMSRIPYKAAVGSLMFLMTSSRPDISFETSKVSQFSENPGPAHWKAVKRILRYIKGTKELRLVYRSKSQSDKGQEGIKSESLQLKAFCDSDWAGDIDSRRSTSGYVLILCGGPDSWSTRVQRGIAQSTVEAEY 629          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A085MUK1_9BILA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MUK1_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-17
Identity = 62/194 (31.96%), Postives = 102/194 (52.58%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R+ + + I Q  Y+E ++E F+V+  + +  P  S +   SK      P E  E+S+ PY+ AVG LM+  T  RPD +     V +F E+PGPAH KAV    +Y+  TK+  + +        G++G +   L + A+ DS +   +D+R   SG V +L    +S  +R++   +  T +AEY
Sbjct:  174 IGLEIHRDRRNKSIVIGQKAYIERILEKFNVQDCKPVACPWESSMK-HSKGMSPTAPDESKEMSRIPYKAAVGSLMFLMTCSRPDISFETSKVSQFSENPGPAHWKAVKRIFRYIKGTKELRLVFRSKSEGDKGQEGTKCDSLQLTAFCDSDWPGDIDSRRSTSGYVLILCGGPVSWSTRVQTGIAQSTVEAEY 366          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A438DMX0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DMX0_VITVI)

HSP 1 Score: 89.4 bits (220), Expect = 2.250e-17
Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARN--IPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  +MRNRK R + + Q LY+++++  F+++ ++   +P   G+   SK    + P+E   +   PY  AVG LM+     RPD       V RF  +PG  H  AV + ++YL  T+D+ + +  Q   L    YTDS F++  D+R   SG V +L   AIS  S  +   +  T +AEY
Sbjct:  630 LGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGI-VLSKDQSPKTPEEIESMKAVPYASAVGSLMYAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIKYLKRTRDYMLVF--QSENLVPIGYTDSDFQSDQDSRKSTSGNVFVLGGGAISWRSIKQTCVADFTMEAEY 809          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A067S2I9_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067S2I9_GALM3)

HSP 1 Score: 87.4 bits (215), Expect = 9.250e-17
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPA-MSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYG----RQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAE 180
            +G  I+R+RK R + +     ++ +V+ F+++ A+ + + M+     +KAD    PKE+ E+ K PY+EAVG LM  A   RPD A   + V +F  +PG  H KAV   + YL  T+D  +T G     Q     + AY+DS      D    +SG      +   S  ++ +   ++ T +AE
Sbjct:  255 LGMDIIRDRKNRTITLSHRHLIDKVVKDFNMQDAKPVHSPMNASSRLAKADSPSTPKERAEMRKIPYQEAVGSLMHIAVNTRPDIAFAVQQVAQFMSNPGQPHWKAVKRIIAYLKTTRDLTLTLGGRPSSQSAASPLIAYSDSDHCNSRDHARSISGFGLFYGQGVFSWSAKKQTSTATSTGEAE 439          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6A2Z9F3_HIBSY (Alpha-galactosidase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z9F3_HIBSY)

HSP 1 Score: 87.0 bits (214), Expect = 1.560e-16
Identity = 59/184 (32.07%), Postives = 87/184 (47.28%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R +R+L++ Q  Y+E M+E F +  A+  P  + +    K    + PK   E   ++K PY   VG LM+     RPD A T   V ++   PG  H  AV    +YL  T   GI +G Q     +  Y DS +   LD R   +G V  L    I   S ++ V +  T++AEY
Sbjct: 1582 LGMEICRDRDSRKLRLSQRGYVEKMLERFAMSSAK--PVSTPLANHFKLSSEQCPKTDKEAENMTKVPYSNVVGCLMYAMVCTRPDLAHTVSQVCKYMSKPGKQHWDAVKWIFRYLKGTVGHGIVFGSQRDNPLVVGYVDSDYACDLDNRRSTTGYVFTLGGGPICWKSTVQSVVALSTTEAEY 1763          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A067SM25_GALM3 (Integrase catalytic domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SM25_GALM3)

HSP 1 Score: 86.3 bits (212), Expect = 2.650e-16
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPA-MSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYG----RQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAE 180
            +G  I+R+ K R + +  H  ++ +V+ F+++ A+ + + M+     +KAD    PKE+ E+ K PY+EAVG LM  A   RPD A   + V +F  +PG  H KAV   + Y   T+D  +T G     Q     + AY+DS      D    +SG      + A S  ++ +   ++ T +AE
Sbjct:  733 LGMDIIRDCKNRTITLSHHHLIDKVVKDFNMQDAKPVHSPMNASSRLAKADSPFTPKERAEMRKIPYQEAVGSLMHIAVNTRPDIAFAVQQVAQFMSNPGQPHWKAVKRIIAYFKTTRDLTLTLGGRPSSQSAASPLIAYSDSDHCNSHDHARSISGFGLFYGQGAFSWSAKKQTSTATSTGEAE 917          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6A2YPQ4_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YPQ4_HIBSY)

HSP 1 Score: 86.3 bits (212), Expect = 2.750e-16
Identity = 59/184 (32.07%), Postives = 87/184 (47.28%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R +R+L++ Q  Y+E M+E F +  A+  P  + +    K    + PK   E   ++K PY  AVG LM+     RPD A     V ++   PG  H  AV    +YL  T   GI +G Q     +  Y DS +   LD R   +G V  L    I   S ++ V +  T++AEY
Sbjct: 1015 LGMEICRDRDSRKLRLSQRGYVEKMLERFAMSSAK--PVSTPLANHFKLSSEQCPKTDKEAENMTKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWDAVKWIFRYLKGTVGHGIVFGSQRDNPLVVGYVDSDYAGDLDNRRSTTGYVFTLGGGPICWKSTVQSVVALSTTEAEY 1196          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6A3CGZ0_HIBSY (Uncharacterized protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CGZ0_HIBSY)

HSP 1 Score: 85.9 bits (211), Expect = 3.730e-16
Identity = 59/184 (32.07%), Postives = 87/184 (47.28%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R +R+L++ Q  Y+E M+E F +  A+  P  + +    K    + PK   E   ++K PY  AVG LM+     RPD A     V ++   PG  H  AV    +YL  T   GI +G Q     +  Y DS +   LD R   +G V  L    I   S ++ V +  T++AEY
Sbjct:  952 LGMEICRDRDSRKLRLSQRGYVEKMLERFAMSSAK--PVSTPLANHFKLSSEQCPKTDKEAENMTKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWDAVKWIFRYLKGTVGHGIIFGSQRDNPLVVGYVDSDYAGDLDNRRSTTGYVFTLGGGPICWKSTVQSVVALSTTEAEY 1133          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A0J7K791_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K791_LASNI)

HSP 1 Score: 84.3 bits (207), Expect = 9.800e-16
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKAR--NIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLC-MEAYTDSTFRTCLDTRCLVSGAVSMLAK 159
            +G  I RNR+ R + I Q  Y++ +   FD+ +A+  +IPA       SK      P      +  PYREA+G L++ AT+ RPD +     V RF      +H  AV    +YL++T+D+GI Y     +   +  Y+DS F + LD+R   SG +  LAK
Sbjct:  295 VGMEIKRNRENRTIFIHQKSYIDRITAYFDMDQAKPVSIPADPHATLCSKDSNNNTP-----CNLIPYREAIGSLLFIATVSRPDISYAVGLVSRFLNKYDLSHWHAVQRIFKYLINTRDYGILYQGNSAKYSNLVGYSDSDFASDLDSRRSTSGYIFKLAK 451          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6A2YIV0_HIBSY (Uncharacterized protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YIV0_HIBSY)

HSP 1 Score: 84.3 bits (207), Expect = 1.280e-15
Identity = 59/184 (32.07%), Postives = 86/184 (46.74%), Query Frame = 0
Query:    1 MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY 181
            +G  I R+R +R+L + Q  Y+E M+E F +  A+  P  + +    K    + PK   E   ++K PY  AVG LM+     RPD A     V ++   PG  H  AV    +YL  T   GI +G Q     +  Y DS +   LD R   +G V  L    I   S ++ V +  T++AEY
Sbjct:  981 LGMEICRDRDSRKLWLSQRGYVEKMLERFAMSSAK--PVSTPLANHFKLSSEQCPKTDKEAKNMTKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWDAVKWIFRYLKGTVGHGIVFGSQRDNPLVVGYVDSDYAGDLDNRRSTTGYVFTLGGGPICWKSTVQSVVALSTTEAEY 1162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6QHL1_TRIMR8.590e-1831.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A085MUK1_9BILA1.710e-1731.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438DMX0_VITVI2.250e-1732.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A067S2I9_GALM39.250e-1730.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A2Z9F3_HIBSY1.560e-1632.07Alpha-galactosidase n=1 Tax=Hibiscus syriacus TaxI... [more]
A0A067SM25_GALM32.650e-1630.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2YPQ4_HIBSY2.750e-1632.07Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3CGZ0_HIBSY3.730e-1632.07Uncharacterized protein n=2 Tax=Hibiscus syriacus ... [more]
A0A0J7K791_LASNI9.800e-1633.95Integrase core domain protein (Fragment) n=1 Tax=L... [more]
A0A6A2YIV0_HIBSY1.280e-1532.07Uncharacterized protein n=2 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11760contigH-elongata_contig11760:4391..4945 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11760.1375.1mRNA_H-elongata_contig11760.1375.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11760 3986..5224 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11760.1375.1 ID=prot_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKAD
ETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGP
AHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLV
SGAVSMLAKRAISRCSRMKYVKSSGTSDAEYSLL*
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