mRNA_H-elongata_contig11760.1375.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.930e-60 Identity = 136/399 (34.09%), Postives = 216/399 (54.14%), Query Frame = 1
Query: 28 ELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGR---QGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEYSLL*AV-KEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
EL + D +QAF++A ++ ++ +PE SG +LNK++YGL QA R W + + A+GFEQ D C+FR V E ++ VVHV+DI + + D+F +LG+ + +K +G+ + Y GC+ +R+A + I Q Y E + E + V+ IP +PT K + + E P+R VG L+W A + RPD A++ RAV R+ +P H KA ++F+ Y + T +GI++ R G L Y D R R SG V M A AI+ S+ + + T+ AEY + + KE++ LRQV +FM P + ++EDN+G I++ + ++ +K+IDV+HH +R + V +V S+ QHAD LTK+L
Sbjct: 213 ELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERC-DQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIP----LPTTWKLWDFDADEPSVEH---PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAA--DRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 202 bits (514), Expect = 5.490e-57 Identity = 135/417 (32.37%), Postives = 221/417 (53.00%), Query Frame = 1
Query: 1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGR---------LNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARN--IPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY-GRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
L A+ E+ D + AFL ++ E Y+E+PE +E A L +++YGL QA R WN I + ++GFE + DPCV+ + + E + ++V+D+L ++ +A + + + ++K++G R +G I + + R L I Q Y ES+++ F + A+ P GV +KADE + ++K ++ PYR VG LM+ A RPD + + RF E+PG H A I ++YLL TKD GI Y G G +L EAY+D+ + D R VSG + ML + S + + +++AEY +L VKE + +R++ + + +VGA+ ++EDN G + L N RTK+ID+++H +R+ S V YV +++Q AD +TK L
Sbjct: 2 LAKCGAEGMEIDQCDVDTAFLYGKMEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGL 413
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A085MUK1_9BILA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MUK1_9BILA) HSP 1 Score: 194 bits (492), Expect = 2.220e-53 Identity = 130/422 (30.81%), Postives = 218/422 (51.66%), Query Frame = 1
Query: 1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQR 1224
L AA ++ E+ D + AFL ID +++ P Y + +G +L + IYGL QA R WN + D + ++ + D CV+ +++ ++ ++V+D L + T+ +L ++ +GD Y+G I R+R+ + + I Q Y+E ++E F+V+ + + P S + SK P E E+S+ PY+ AVG LM+ T RPD + V +F E+PGPAH KAV +Y+ TK+ + + G++G + L + A+ DS + +D+R SG V +L +S +R++ + T +AEY ++ A KE+ RQ Q F + + + + DN G I L TN RRTK+IDV++H +R + T+ Y+ +Q AD+LTK L +R
Sbjct: 40 LAMAAEEDLEVLQFDVKTAFLHGIIDEVVFMDQPPHYDDQTGRVCKLQRAIYGLKQAPRAWNKRFHDFLLSLNLRRAEADQCVYVSEKESDERVILTLYVDDGLICCSEKGTLSTMVMKLMNEFEI-TVGDPSYYIGLEIHRDRRNKSIVIGQKAYIERILEKFNVQDCKPVACPWESSMK-HSKGMSPTAPDESKEMSRIPYKAAVGSLMFLMTCSRPDISFETSKVSQFSENPGPAHWKAVKRIFRYIKGTKELRLVFRSKSEGDKGQEGTKCDSLQLTAFCDSDWPGDIDSRRSTSGYVLILCGGPVSWSTRVQTGIAQSTVEAEYVAISEATKEIKWFRQ-QLFDLGTEQRKPMCLLTDNQGAICLTTNPQFHRRTKHIDVRYHFIRAEQENGTITVDYISGHEQPADMLTKGLPPRR 458
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A5S6QHL1_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QHL1_TRIMR) HSP 1 Score: 190 bits (483), Expect = 2.830e-50 Identity = 126/422 (29.86%), Postives = 215/422 (50.95%), Query Frame = 1
Query: 1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQR 1224
L AA ++ E+ D + AFL +D +++ P Y + +G +L + IYGL QA R WN + D + ++ + D CV+ + ++ ++V+D L + + +L + ++ +GD Y+G I R+R+ + + I Q Y+E ++E F+++ + + P S + SK P E E+S+ PY+ AVG LM+ T RPD + V +F E+PGPAH KAV ++Y+ TK+ + Y G++G + L ++A+ DS + +D+R SG V +L S +R++ + T +AEY ++ A KE+ RQ+ + R + DN G I L TN RRTK+IDV++H +R + ++ Y+ +Q AD+LTK L + R
Sbjct: 303 LAIAAEEDLEVLQFDVKTAFLHGTLDELVFMDQPPHYDDQTGRVCKLQRAIYGLKQAPRAWNKRFHDFLLSLNLGRTQADQCVYVSKKGLDERVILTLYVDDGLICCSEKGALSSIVKKLMKEFEI-TVGDPSYYIGLEIHRDRRNKSIAIGQKAYIERILEKFNMQDCKPVACPWESSMK-LSKEMSPTTPDESKEMSRIPYKAAVGSLMFLMTSSRPDISFETSKVSQFSENPGPAHWKAVKRILRYIKGTKELRLVYRSKSQSDKGQEGIKSESLQLKAFCDSDWAGDIDSRRSTSGYVLILCGGPDSWSTRVQRGIAQSTVEAEYVAISEATKEIKWFRQLLLDLGRDQRKPTC-LLSDNQGAICLTTNPQFHRRTKHIDVRYHFIRAEQENGSITVDYISGHEQPADMLTKGLPLSR 721
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A182GAG1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GAG1_AEDAL) HSP 1 Score: 181 bits (460), Expect = 1.780e-49 Identity = 110/399 (27.57%), Postives = 207/399 (51.88%), Query Frame = 1
Query: 40 LDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
+D + AFL ++ + Y+ +P+ + G +L K++YGL Q+ RCWN ++ + +GF + + D C++ K + ++ V++V+D+L + ++ R EL K+ + G+ ++G +M NR+ L++ Q + +++ FD+ + P G+ K G +K PYRE +G +M+T +RPD + RF ++P H + + ++YL T+ + Y R+ + + D+ + + R VSG + + +S S+ + ++ +S+AEY +L A E I L + + ++ + V V ++EDN G I + N+ ++R+K+IDVKHH +RD + ++ V S+DQ AD+LTK+LD RF
Sbjct: 1 MDVKTAFLYGDLKEDIYMAVPDGVKANQGMVCKLQKSLYGLKQSPRCWNERLNGQLLKMGFTRSSHDYCLYTKCTPGDE-LIIVIYVDDLLIAGRKLTSIVRLKKELSAVFKMTDCGEANYFLGMKLMYNREEGTLRLSQEAQVTKILQRFDMVNCNSCKTPMEKGLQL----------KRDGPSTKEPYREVLGSMMYTMLCVRPDICYPVSYMGRFQQNPADHHWQTLKRIVRYLQGTQGLCLEYRREEAAEPLVGFADADWAADTEDRKSVSGYLFKVFGATVSWSSKKQTTVATSSSEAEYVALSAAASEAIWLTGILEDLK--ITVKPVIIYEDNRGCIGMAKNRE-TKRSKHIDVKHHFLRDHVEAGRLQIEPVSSQDQLADMLTKALDTSRF 385
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 187 bits (475), Expect = 2.090e-48 Identity = 122/409 (29.83%), Postives = 210/409 (51.34%), Query Frame = 1
Query: 28 ELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEA----YMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVK--KARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
E+ +D + AFL+ +D +++ PE Y QE +LN++IYGL QA RCWN+ I + + G+ + N DPC++ K + + +++ ++V+DIL + + + + L + ++++MG+ +G + RNR+AR L I+Q Y+E +++ F ++ KA + P G F E P + E Y+ A+G L + RPD A+ + ++ PG H + V ++Y+ T G+T+ G + Y D+ + ++TR SG V + IS CS+ + S T++AEY +L A +E + LR++ + V + +FEDN G I+L N RTK+IDV H +R+ V Y R+E+ AD++TK+L F
Sbjct: 920 EISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPG-RKFESLSENDTPIDVRE-----YQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPST-IFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSF 1321
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A151SSH9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SSH9_CAJCA) HSP 1 Score: 179 bits (454), Expect = 2.220e-48 Identity = 121/403 (30.02%), Postives = 210/403 (52.11%), Query Frame = 1
Query: 31 LRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPT-FSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGR--QGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
L LD + AFL ++D Y+E PE + L K++YGL Q+ R W + D + + F + + D CV+ + + + + +++V+DIL ++ + ++ +L ++K +G R +G I+RN+ L++ Q +YM+ +VE F + K++++ G T S++ + E+ + PY VG +M+ RPD A V RF +PG AH + + ++Y+ T + G+ Y + QG +E + D+ + C+DTR +SG V L A+S + ++ V + T++AEY +L VKE + L+ + E + V + D+ I L ++ RTK+IDVKHH +R+ + TVR + SED AD+LTKSL +F
Sbjct: 11 LEQLDVKTAFLHGDLDETIYMEQPEGFAVDQRVC-LLQKSLYGLKQSPRQWYKRFDDFLMRMKFRRCSYDSCVYI-LSEEQDCLYLLLYVDDILVASRNKQIINELKMKLSSEFEMKNLGVARRILGVDIIRNQTKGVLRLTQQVYMKKVVERFRMHKSKSVGTPLGHHTKLSRSQAPVSEDERRRMDVVPYASGVGSIMYGMVCTRPDLAHAVSVVSRFMGNPGQAHWETLKWMLRYVNGTLESGLLYRKRHQG-GAAIEGFVDADYAGCVDTRKSLSGYVFTLFGTAVSWKANLQSVVALSTTEAEYIALAEGVKEGLWLKGMLN--ELGIEQECVQIHCDSQSAIHLANHQMYHERTKHIDVKHHFIREVVETGTVRIVKIASEDNPADMLTKSLPRCKF 408
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID) HSP 1 Score: 186 bits (472), Expect = 5.140e-48 Identity = 114/409 (27.87%), Postives = 215/409 (52.57%), Query Frame = 1
Query: 28 ELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVV---DAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY-GRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRFYK 1233
EL +D + AFL +++ + +++ PE + ++ A +L K+IYGL Q+ RCWN K+ + + GF + + DPC++ K + D ++ V+V+D+L + +LG+ ++++ + +G + R+RK R L IDQ+ ++ S++ F++ + + P + + K ++ + +E ++ Y+ A+G L + + RPD ++ + + PG H V ++YL T D+G+ Y G + + + + D+ + +DTR SG V + +S S+ + + + ++AEY +L A +EVI LR + + M+ + +FEDN G I+L N+ RTK+ID+K H +RDA + + Y +++ ADLLTK L +F K
Sbjct: 882 ELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECK--PVATPLEPSMKFEKLADDEEIVKLKD--YQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFE-QTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEK 1285
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE) HSP 1 Score: 177 bits (448), Expect = 7.060e-48 Identity = 110/367 (29.97%), Postives = 195/367 (53.13%), Query Frame = 1
Query: 136 RLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPA-MSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLC-MEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
RL K+IYGL QA R WN K+ + + G Q D CV+ K+ D ++ ++ V V+D+L + + + L ++ K+ ++G+ + +G + R+R+A+ + I Q Y+E M++ F + A + MS FSK + E+ + K PY+EA+G L++ A + RPD A ++ RF +PG AH V +YL T + + + G + + Y D+ + + D R V+G + + IS C++ + + T++AEY ++ A +E + LR + + +E S ++ +F DN G L N RTK+IDV+HH +R+ ++ + Y+ + AD LTK+LD+++F
Sbjct: 8 RLRKSIYGLKQASRIWNQKLDLVLQSFGLTQSKFDSCVYFKI-DGKSMLIVAVWVDDLLIFSNDRKLKKQVKLRLTRSFKMTDLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHMDAANPVTTPMSNSEKFSKNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSYKLQF--DGLKAGPIHGYCDADWASDPDERRSVTGYIFVKCNGPISWCTKRQPTVALSTTEAEYMAMSSAAQEGLWLRGLSEEIEQSSQI-PTQIFCDNQGARNLALNGAYQPRTKHIDVRHHFLRERIQAKLLAFTYIPTNRMVADSLTKALDVEKF 370
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU) HSP 1 Score: 185 bits (470), Expect = 9.990e-48 Identity = 124/410 (30.24%), Postives = 219/410 (53.41%), Query Frame = 1
Query: 1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
L AA + E+ +D + AFL +++ E Y++ P+ + + RL K++YGL QA R W K M G+++ D CVF K + +++ +++V+DIL K + ++R +L ++ +K+MG + +G IMR+R+ ++L + Q Y++ +++ F ++ A+ + + + T K ++P EK ++ + PY AVG LM+ RPD A V RF +PG H AV ++YL T + +G G + + YTDS +D+R SG V A A++ SR++ + T++AE+ ++ A KE++ ++++ Q E S +F D+ I L N R+K+IDV++H +RDA +R + A V ++D AD++TKSL
Sbjct: 852 LSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVS--TPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFG--GDKPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQ--ELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLELAKVHTDDNCADMMTKSL 1255 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11760.1375.1 >prot_H-elongata_contig11760.1375.1 ID=prot_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADback to top mRNA from alignment at H-elongata_contig11760:3986..5224+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11760.1375.1 ID=mRNA_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-elongata_contig11760:3986..5224+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11760:3986..5224+ >mRNA_H-elongata_contig11760.1375.1 ID=mRNA_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig11760:3986..5224+ (Himanthalia elongata Himel1 dioecious)back to top |