prot_H-elongata_contig112122.986.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112122.986.1
Unique Nameprot_H-elongata_contig112122.986.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: W9RQX6_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RQX6_9ROSA)

HSP 1 Score: 59.7 bits (143), Expect = 7.510e-9
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+ A LDW  +QLDV   +L  D++EE+Y+E+P  + D   QV  LKK++YGL  +   W+
Sbjct:   75 LSITANLDWSLQQLDVKNAFLNGDLEEEVYMEMPPGFEDKGDQVCKLKKSLYGLKQSPRAWF 136          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A8J6DDM6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DDM6_9ROSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.910e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+ A LDW   QLDV   +L  ++ EE+Y++ P  + +SK QV  LKK++YGL  +   W+
Sbjct:  440 LSLAANLDWHLTQLDVKNAFLNGELNEEVYIDFPPGFEESKGQVCKLKKSLYGLKQSPRAWF 501          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A8J6D7M8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D7M8_9ROSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.570e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+ A LDW   QLDV   +L  ++ EE+Y++ P  + +SK QV  LKK++YGL  +   W+
Sbjct:  784 LSLAANLDWHLTQLDVKNTFLNGELSEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPRAWF 845          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI)

HSP 1 Score: 57.8 bits (138), Expect = 3.580e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+ A LDW   QLDV   +L  ++ EE+Y++ P  + +SK QV  LKK++YGL  +   W+
Sbjct:  888 LSLAANLDWHLTQLDVKNAFLNGELSEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPRAWF 949          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 57.4 bits (137), Expect = 4.920e-8
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            L++ A LD E  Q+DV   +L  D+ EEIY+ +P ++R   K +  L KA+YGL  AG  WY
Sbjct:  975 LALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWY 1036          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A8J5Z0V2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z0V2_9ROSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.710e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+ A LDW   QLDV   +L  ++ EE+Y++ P  + +SK QV  LKK++YGL  +   W+
Sbjct:  670 LSLAANLDWHLTQLDVKNAFLNRELSEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPPAWF 731          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A0C3DBP3_9AGAM (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3DBP3_9AGAM)

HSP 1 Score: 55.8 bits (133), Expect = 1.710e-7
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQ--VGLLKKAMYGLVHAGLLW 63
            LS++A  DWE  Q+DV   YL+ D+ EEIY+E+PE  ++  K+     L KA+YGL  AG  W
Sbjct:  645 LSIVAHEDWELHQVDVVGAYLQGDLDEEIYMEVPEGVKEKGKEGWYWKLTKALYGLKQAGRQW 707          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A8J5Y6D9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6D9_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLKKAMYGLVHAGLLWY 64
            LS+   L+W   QLDV   +L  ++ EE+Y++ P  + +SK QV  LKK++YGL  +   W+
Sbjct:  723 LSIAVNLEWPLIQLDVKNAFLNGELNEEVYMDFPPGFEESKGQVCKLKKSLYGLKQSPRAWF 784          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: O65452_ARATH (LTR retrotransposon like protein n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=O65452_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYR-DSKKQVGLLKKAMYGLVHAGLLWY 64
            L + AA DW   Q+DV   +L  D+KEE+Y++LP+ ++ D   +V  L K++YGL  A   W+
Sbjct:  694 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWF 756          
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Match: A0A5S9X0X4_ARATH (Integrase catalytic domain-containing protein n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9X0X4_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    3 LSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYR-DSKKQVGLLKKAMYGLVHAGLLWY 64
            L + AA DW   Q+DV   +L  D+KEE+Y++LP+ ++ D   +V  L K++YGL  A   W+
Sbjct: 1001 LGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWF 1063          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112122.986.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W9RQX6_9ROSA7.510e-943.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6DDM6_9ROSI1.910e-841.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D7M8_9ROSI3.570e-841.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6D396_9ROSI3.580e-841.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GM49_9APHY4.920e-843.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5Z0V2_9ROSI6.710e-841.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A0C3DBP3_9AGAM1.710e-746.03Integrase catalytic domain-containing protein (Fra... [more]
A0A8J5Y6D9_9ROSI1.540e-638.71Integrase catalytic domain-containing protein n=1 ... [more]
O65452_ARATH1.540e-639.68LTR retrotransposon like protein n=2 Tax=Arabidops... [more]
A0A5S9X0X4_ARATH1.540e-639.68Integrase catalytic domain-containing protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..64
e-value: 2.5E-10
score: 40.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112122contigH-elongata_contig112122:916..1107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112122.986.1mRNA_H-elongata_contig112122.986.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112122 631..1107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112122.986.1 ID=prot_H-elongata_contig112122.986.1|Name=mRNA_H-elongata_contig112122.986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLSMIAALDWEARQLDVGMVYLEADVKEEIYVELPEAYRDSKKQVGLLK
KAMYGLVHAGLLWY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2