prot_H-elongata_contig110463.865.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110463.865.1
Unique Nameprot_H-elongata_contig110463.865.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length292
Homology
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: D8LLH4_ECTSI (Protein ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 7.140e-56
Identity = 146/374 (39.04%), Postives = 168/374 (44.92%), Query Frame = 0
Query:   39 REFAQG--------FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASM----IEHVCFAGGAVFCAW--IATAAFH-------------QQRNRDFGKCNNGF-------------------------------------------------------------SPIPGEFEVPRP---------------------------------AATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDAAAVSDTRKNKVAVSAVATGLVSRMGIRFILCIYFGTEARALRML 291
            RE+ +G        +CRSVADKYIE EF+L+AID+ LHRVQAYRHLLFN RPFSTHSF GRLWQLGV MAAL AHLRHTALS+EA                                  +EH CFA GAV  A   +  AA               ++  R  G  N G                                                              S        PRP                                  A KMYMA+VYP+FFRLLAAFVMIWD QVAILNT E+LVA MQFVALSA VG  AAVS   +  VA  +V  GL S+M  R +LC++FG++ R LRML
Sbjct:   50 REYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAAXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 423          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: W7TPQ8_9STRA (Protein ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPQ8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-19
Identity = 66/209 (31.58%), Postives = 107/209 (51.20%), Query Frame = 0
Query:   45 FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCA-WIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDAAAVSD 252
            FC +VAD+ IE E +LV +D+ LHR+ A+RH+LFNR+P +   F  +LW++ + +  +  H+++    + ++      + L +T +   L     ILL S +EH  F G  VF   W+     H  R +  G  +   +P    F        K+  AL++P F R +  FVM+WD    + N   +LV   Q+ AL A V  A A+++
Sbjct:   73 FCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQ-LSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPAS---TPYTRTF-----VTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNE 271          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CB94C46 (protein ARV 2-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94C46)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-11
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVF 157
            CR+VAD+YIECE +++ ID++LH+ +AYRHL +N       +F G +W+L      L A+     ++NE    ++     P  D +  +W  G ILL +++ ++ F G  +F
Sbjct:   32 CRAVADEYIECEIMILLIDLILHKAKAYRHLFYNMFDREAMNFEGLMWKLTFGFLLLDAYRISILITNEEGWGAN-----PGLDSL--IWAGGKILLDTIVGNILFTGILLF 136          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A7S1CNP5_9STRA (Protein ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNP5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.380e-11
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   30 VCFVLARAA----REFAQG--------FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAAL 102
            +C V  R+     RE+++G         C++VADKYIE E +L+AIDMVLHR+  YRHLLFNR  +  H     +  + +A+  L
Sbjct:   16 ICVVCGRSLSHVFREYSKGNIRLSRCDHCKNVADKYIEYELVLIAIDMVLHRISVYRHLLFNRLEYQEHGVPRPIVMIAIAILCL 100          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CFB7BA1 (protein ARV 1-like isoform X3 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB7BA1)

HSP 1 Score: 69.7 bits (169), Expect = 1.960e-10
Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTAL--SNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 240
            CR+VAD+YIECE +++ ID++LH+ QAYRHLL+N     T +  G LW+  +    L A+ R   L  SNE    S    SL        +W     L   M++ V F      C ++  + F          C N  + +        P    + +A++   +F++    +MIW    +++   ++LV +   VAL
Sbjct:   32 CRAVADEYIECEIMILLIDLILHKPQAYRHLLYNVINPETVNLEGLLWKSTIGFVLLDAY-RSLLLRRSNEDLSSSMNFNSL--------VW-----LCQKMLKDVVFGNIMFLCVFLLASRF----------CLNMSAGV--------PRFKDLLLAILISSYFKIFLVAMMIWKFPSSVIFIIDLLVLSSNIVAL 196          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CFA4071 (protein ARV 2-like isoform X1 n=6 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFA4071)

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-10
Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTAL--SNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 240
            CR+VAD+YIECE +++ ID++LH+ QAYRHLL+N     T +  G LW+  +    L A+ R   L  SNE    S    SL        +W     L   M++ V F      C ++  + F          C N  + +        P    + +A++   +F++    +MIW    +++   ++LV +   VAL
Sbjct:   32 CRAVADEYIECEIMILLIDLILHKPQAYRHLLYNVINPETVNLEGLLWKSTIGFVLLDAY-RSLLLRRSNEDLSSSMNFNSL--------VW-----LCQKMLKDVVFGNIMFLCVFLLASRF----------CLNMSAGV--------PRFKDLLLAILISSYFKIFLVAMMIWKFPSSVIFIIDLLVLSSNIVAL 196          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A3N7FYG6_POPTR (Protein ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_POPTR)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-10
Identity = 49/195 (25.13%), Postives = 88/195 (45.13%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 240
            C++VAD+YIECEF+++ ID++LH+ +AYRHLLFN     T +F G LW+   A   L A+       NE    SS   S         +W    I++   + +  F     FC ++ +       +    +C +                  + +A++   +F++     M+W+   +++   ++ V +   VAL
Sbjct:   32 CKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS-------SIVWTFEEIVVDVFVGNFVF-----FCIFLLSMRLMLNTSIQISRCKD------------------ILLAILVSSYFKIFLIATMVWEFPSSVIFIIDLFVLSSNTVAL 196          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A836DLE2_9ROSI (Protein ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DLE2_9ROSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-10
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVS 124
            C++VAD+YIECEF++++ID++LH+ +AYRHLLFN     T +F G LW+   A   L A+       NE    SS   S
Sbjct:   43 CKAVADEYIECEFMIISIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS 121          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A3N7G147_POPTR (Protein ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_POPTR)

HSP 1 Score: 68.9 bits (167), Expect = 4.190e-10
Identity = 49/195 (25.13%), Postives = 88/195 (45.13%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 240
            C++VAD+YIECEF+++ ID++LH+ +AYRHLLFN     T +F G LW+   A   L A+       NE    SS   S         +W    I++   + +  F     FC ++ +       +    +C +                  + +A++   +F++     M+W+   +++   ++ V +   VAL
Sbjct:   32 CKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS-------SIVWTFEEIVVDVFVGNFVF-----FCIFLLSMRLMLNTSIQISRCKD------------------ILLAILVSSYFKIFLIATMVWEFPSSVIFIIDLFVLSSNTVAL 196          
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A251KSD1_MANES (Protein ARV n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251KSD1_MANES)

HSP 1 Score: 68.9 bits (167), Expect = 4.550e-10
Identity = 49/203 (24.14%), Postives = 91/203 (44.83%), Query Frame = 0
Query:   46 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVF-CAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDA 247
            C+++AD+YIECE +++ ID++LH+ +AYRHLL+N     T    G LW+  V      A+     L N+  +E S  +S P       +W +  I +        F G  +F C ++       + +  F  C +                  M +A++   +F++    +M+W+   +++   ++ V +   VA+    G A
Sbjct:   32 CKAIADEYIECELMIILIDLILHKPKAYRHLLYNVLNQQTVELEGLLWKSTVTFLLFDAYRSLLLLRNK--EEQSSALSFPSL-----VWRSQQIFMD------VFVGNLIFLCVFVLATRVLLKISVGFSSCGD------------------MLLAILVSSYFKMFLVAMMVWEFPSSVIFIIDLFVLSSNVVAIKVFTGSA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLH4_ECTSI7.140e-5639.04Protein ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
W7TPQ8_9STRA3.100e-1931.58Protein ARV n=1 Tax=Nannochloropsis gaditana TaxID... [more]
UPI001CB94C462.720e-1133.93protein ARV 2-like n=1 Tax=Erigeron canadensis Tax... [more]
A0A7S1CNP5_9STRA6.380e-1141.18Protein ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-... [more]
UPI001CFB7BA11.960e-1028.43protein ARV 1-like isoform X3 n=1 Tax=Mangifera in... [more]
UPI001CFA40712.200e-1028.43protein ARV 2-like isoform X1 n=6 Tax=Anacardiacea... [more]
A0A3N7FYG6_POPTR2.450e-1025.13Protein ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N... [more]
A0A836DLE2_9ROSI3.000e-1044.30Protein ARV n=1 Tax=Salix suchowensis TaxID=127890... [more]
A0A3N7G147_POPTR4.190e-1025.13Protein ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N... [more]
A0A251KSD1_MANES4.550e-1024.14Protein ARV n=1 Tax=Manihot esculenta TaxID=3983 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007290Arv1 proteinPFAMPF04161Arv1coord: 46..240
e-value: 1.7E-25
score: 90.5
IPR007290Arv1 proteinPANTHERPTHR14467ARV1coord: 46..260
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 230..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 252..257
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..197
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 219..229
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 198..218
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 258..282
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 283..291
NoneNo IPR availableTMHMMTMhelixcoord: 258..280
NoneNo IPR availableTMHMMTMhelixcoord: 201..218
NoneNo IPR availableTMHMMTMhelixcoord: 223..245
NoneNo IPR availableTMHMMTMhelixcoord: 144..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110463contigH-elongata_contig110463:309..1649 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110463.865.1mRNA_H-elongata_contig110463.865.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110463 237..1649 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110463.865.1 ID=prot_H-elongata_contig110463.865.1|Name=mRNA_H-elongata_contig110463.865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MSSENRALFGAGLTPDAVSLSRFLLLLYPVCFVLARAAREFAQGFCRSVA
DKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMA
ALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVC
FAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYM
ALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDAAAV
SDTRKNKVAVSAVATGLVSRMGIRFILCIYFGTEARALRML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007290Arv1