mRNA_H-elongata_contig110463.865.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: D8LLH4_ECTSI (Protein ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECTSI) HSP 1 Score: 195 bits (495), Expect = 1.530e-55 Identity = 146/374 (39.04%), Postives = 168/374 (44.92%), Query Frame = 1
Query: 187 REFAQG--------FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASM----IEHVCFAGGAVFCAW--IATAAFH-------------QQRNRDFGKCNNGF-------------------------------------------------------------SPIPGEFEVPRP---------------------------------AATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDAAAVSDTRKNKVAVSAVATGLVSRMGIRFILCIYFGTEARALRML 945
RE+ +G +CRSVADKYIE EF+L+AID+ LHRVQAYRHLLFN RPFSTHSF GRLWQLGV MAAL AHLRHTALS+EA +EH CFA GAV A + AA ++ R G N G S PRP A KMYMA+VYP+FFRLLAAFVMIWD QVAILNT E+LVA MQFVALSA VG AAVS + VA +V GL S+M R +LC++FG++ R LRML
Sbjct: 50 REYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAAXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 423
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: W7TPQ8_9STRA (Protein ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPQ8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 4.860e-19 Identity = 66/209 (31.58%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 205 FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCA-WIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDAAAVSD 828
FC +VAD+ IE E +LV +D+ LHR+ A+RH+LFNR+P + F +LW++ + + + H+++ + ++ + L +T + L ILL S +EH F G VF W+ H R + G + +P F K+ AL++P F R + FVM+WD + N +LV Q+ AL A V A A+++
Sbjct: 73 FCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQ-LSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPAS---TPYTRTF-----VTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNE 271
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CB94C46 (protein ARV 2-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94C46) HSP 1 Score: 72.4 bits (176), Expect = 3.620e-11 Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVF 543
CR+VAD+YIECE +++ ID++LH+ +AYRHL +N +F G +W+L L A+ ++NE ++ P D + +W G ILL +++ ++ F G +F
Sbjct: 32 CRAVADEYIECEIMILLIDLILHKAKAYRHLFYNMFDREAMNFEGLMWKLTFGFLLLDAYRISILITNEEGWGAN-----PGLDSL--IWAGGKILLDTIVGNILFTGILLF 136
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A7S1CNP5_9STRA (Protein ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNP5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 8.120e-11 Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 160 VCFVLARAA----REFAQG--------FCRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAAL 378
+C V R+ RE+++G C++VADKYIE E +L+AIDMVLHR+ YRHLLFNR + H + + +A+ L
Sbjct: 16 ICVVCGRSLSHVFREYSKGNIRLSRCDHCKNVADKYIEYELVLIAIDMVLHRISVYRHLLFNRLEYQEHGVPRPIVMIAIAILCL 100
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CFB7BA1 (protein ARV 1-like isoform X3 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB7BA1) HSP 1 Score: 69.7 bits (169), Expect = 2.540e-10 Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTAL--SNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 792
CR+VAD+YIECE +++ ID++LH+ QAYRHLL+N T + G LW+ + L A+ R L SNE S SL +W L M++ V F C ++ + F C N + + P + +A++ +F++ +MIW +++ ++LV + VAL
Sbjct: 32 CRAVADEYIECEIMILLIDLILHKPQAYRHLLYNVINPETVNLEGLLWKSTIGFVLLDAY-RSLLLRRSNEDLSSSMNFNSL--------VW-----LCQKMLKDVVFGNIMFLCVFLLASRF----------CLNMSAGV--------PRFKDLLLAILISSYFKIFLVAMMIWKFPSSVIFIIDLLVLSSNIVAL 196
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: UPI001CFA4071 (protein ARV 2-like isoform X1 n=6 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFA4071) HSP 1 Score: 69.7 bits (169), Expect = 2.870e-10 Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTAL--SNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 792
CR+VAD+YIECE +++ ID++LH+ QAYRHLL+N T + G LW+ + L A+ R L SNE S SL +W L M++ V F C ++ + F C N + + P + +A++ +F++ +MIW +++ ++LV + VAL
Sbjct: 32 CRAVADEYIECEIMILLIDLILHKPQAYRHLLYNVINPETVNLEGLLWKSTIGFVLLDAY-RSLLLRRSNEDLSSSMNFNSL--------VW-----LCQKMLKDVVFGNIMFLCVFLLASRF----------CLNMSAGV--------PRFKDLLLAILISSYFKIFLVAMMIWKFPSSVIFIIDLLVLSSNIVAL 196
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A3N7FYG6_POPTR (Protein ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_POPTR) HSP 1 Score: 68.9 bits (167), Expect = 3.160e-10 Identity = 49/195 (25.13%), Postives = 88/195 (45.13%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 792
C++VAD+YIECEF+++ ID++LH+ +AYRHLLFN T +F G LW+ A L A+ NE SS S +W I++ + + F FC ++ + + +C + + +A++ +F++ M+W+ +++ ++ V + VAL
Sbjct: 32 CKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS-------SIVWTFEEIVVDVFVGNFVF-----FCIFLLSMRLMLNTSIQISRCKD------------------ILLAILVSSYFKIFLIATMVWEFPSSVIFIIDLFVLSSNTVAL 196
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A836DLE2_9ROSI (Protein ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DLE2_9ROSI) HSP 1 Score: 68.9 bits (167), Expect = 3.870e-10 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVS 444
C++VAD+YIECEF++++ID++LH+ +AYRHLLFN T +F G LW+ A L A+ NE SS S
Sbjct: 43 CKAVADEYIECEFMIISIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS 121
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A3N7G147_POPTR (Protein ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_POPTR) HSP 1 Score: 68.9 bits (167), Expect = 5.420e-10 Identity = 49/195 (25.13%), Postives = 88/195 (45.13%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVFCAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVAL 792
C++VAD+YIECEF+++ ID++LH+ +AYRHLLFN T +F G LW+ A L A+ NE SS S +W I++ + + F FC ++ + + +C + + +A++ +F++ M+W+ +++ ++ V + VAL
Sbjct: 32 CKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAYRSLLLKRNEGEWGSSMSFS-------SIVWTFEEIVVDVFVGNFVF-----FCIFLLSMRLMLNTSIQISRCKD------------------ILLAILVSSYFKIFLIATMVWEFPSSVIFIIDLFVLSSNTVAL 196
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Match: A0A251KSD1_MANES (Protein ARV n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251KSD1_MANES) HSP 1 Score: 68.9 bits (167), Expect = 5.900e-10 Identity = 49/203 (24.14%), Postives = 91/203 (44.83%), Query Frame = 1
Query: 208 CRSVADKYIECEFILVAIDMVLHRVQAYRHLLFNRRPFSTHSFHGRLWQLGVAMAALHAHLRHTALSNEATQESSRKVSLPETDEIDPLWETGGILLASMIEHVCFAGGAVF-CAWIATAAFHQQRNRDFGKCNNGFSPIPGEFEVPRPAATKMYMALVYPMFFRLLAAFVMIWDHQVAILNTTEMLVAAMQFVALSAAVGDA 813
C+++AD+YIECE +++ ID++LH+ +AYRHLL+N T G LW+ V A+ L N+ +E S +S P +W + I + F G +F C ++ + + F C + M +A++ +F++ +M+W+ +++ ++ V + VA+ G A
Sbjct: 32 CKAIADEYIECELMIILIDLILHKPKAYRHLLYNVLNQQTVELEGLLWKSTVTFLLFDAYRSLLLLRNK--EEQSSALSFPSL-----VWRSQQIFMD------VFVGNLIFLCVFVLATRVLLKISVGFSSCGD------------------MLLAILVSSYFKMFLVAMMVWEFPSSVIFIIDLFVLSSNVVAIKVFTGSA 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110463.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110463.865.1 >prot_H-elongata_contig110463.865.1 ID=prot_H-elongata_contig110463.865.1|Name=mRNA_H-elongata_contig110463.865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp MSSENRALFGAGLTPDAVSLSRFLLLLYPVCFVLARAAREFAQGFCRSVAback to top mRNA from alignment at H-elongata_contig110463:237..1649+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110463.865.1 ID=mRNA_H-elongata_contig110463.865.1|Name=mRNA_H-elongata_contig110463.865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-elongata_contig110463:237..1649+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110463:237..1649+ >mRNA_H-elongata_contig110463.865.1 ID=mRNA_H-elongata_contig110463.865.1|Name=mRNA_H-elongata_contig110463.865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig110463:237..1649+ (Himanthalia elongata Himel1 dioecious)back to top |