prot_H-elongata_contig109963.807.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig109963.807.1
Unique Nameprot_H-elongata_contig109963.807.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 4.120e-60
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 0
Query:    2 SLLAKAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            SL+AKAEAQELMMVP+NIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDL+MNLLM + TWDGKVPAPAILKP+PLWTGKQ+F+LICPKVNL      HP  G   LN+   +VL+ EGEL+MG++DKKTV
Sbjct:  534 SLVAKAEAQELMMVPRNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLLMNLLMWVETWDGKVPAPAILKPKPLWTGKQLFSLICPKVNLETSANGHPK-GANPLNNSDTKVLIHEGELMMGNIDKKTV 665          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.150e-55
Identity = 102/141 (72.34%), Postives = 117/141 (82.98%), Query Frame = 0
Query:    2 SLLAKAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRV--------HPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            SL+AKAEAQELMMVP+NIVSPQSNKPVMGI  DSLLGVCKMTKRDTFVERDL+MNLLM + TWDGKVPAPAILKP+PLWTGKQ+F+LICPKV+ S  G+V        HP  G   LN+   +VL+ EGEL+MG++DKKTV
Sbjct:  530 SLVAKAEAQELMMVPRNIVSPQSNKPVMGI--DSLLGVCKMTKRDTFVERDLLMNLLMWVETWDGKVPAPAILKPKPLWTGKQLFSLICPKVHGSRTGKVNLETSANGHPK-GANPLNNSDTKVLIHEGELMMGNIDKKTV 667          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 7.100e-50
Identity = 90/133 (67.67%), Postives = 104/133 (78.20%), Query Frame = 0
Query:    2 SLLAKAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            S++AKAE QELM VP+NIVSPQSNKPVMGIVQDSLL VCKMTKRD F+E+DL+M +LM +  W+G VPAPAI KPRPLWTGKQ+F++ICP VN       HP  G   LN    +VLV +GELIMG VDKKTV
Sbjct:  525 SVVAKAEVQELMSVPRNIVSPQSNKPVMGIVQDSLLAVCKMTKRDVFIEKDLLMCVLMVVDNWNGLVPAPAIYKPRPLWTGKQLFSVICPDVNFRTTANGHPK-GANELNASDTEVLVHQGELIMGIVDKKTV 656          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWF5_9FLOR (DNA-directed RNA polymerase (Fragment) n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=D8UWF5_9FLOR)

HSP 1 Score: 160 bits (405), Expect = 1.120e-45
Identity = 79/129 (61.24%), Postives = 95/129 (73.64%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE QELM+VP  IVSPQ NKPVMGIVQD+LLG    T+RDTF+ERDLMMNLL+ +G WDG +P PAI KPRPLWTGKQ+F+L+ PKVNL      HP      ++    +V + +GELI G VDKKTV
Sbjct:   21 RAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMNLLLHVGDWDGVIPEPAIYKPRPLWTGKQIFSLVLPKVNLIRYNLTHPDEEKTDISPGDTKVYISQGELICGIVDKKTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWF4_9FLOR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Antithamnion nipponicum TaxID=179279 RepID=D8UWF4_9FLOR)

HSP 1 Score: 159 bits (403), Expect = 2.230e-45
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE  ELM+VP NIVSPQ NKPVMGIVQD+LLG    T+RDTF+ RDLMMN+LM +G WDG +P PAI KP PLWTGKQ+F+LI PKVNL+     HP   +  ++    +V +  GELI G VDK+TV
Sbjct:   21 RAEVMELMLVPHNIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLRRDLMMNMLMHVGDWDGVIPEPAIYKPEPLWTGKQIFSLILPKVNLTRLANPHPDGEVSDISPGDTKVYISRGELICGIVDKRTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWG6_9FLOR (DNA-directed RNA polymerase (Fragment) n=8 Tax=Rhodomelaceae TaxID=2803 RepID=D8UWG6_9FLOR)

HSP 1 Score: 157 bits (398), Expect = 1.250e-44
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE QELM+VP  +VSPQSNKPVMGI+QD+LLG   +T+RDTF+ERDL+MNLLM +G WDG VP PAILKP+PLWTGKQ+F+LI PKVN+S     H       ++    +V++  G L+ G VDKKTV
Sbjct:   21 RAEVQELMLVPHCVVSPQSNKPVMGIIQDTLLGCMLLTQRDTFIERDLVMNLLMHVGGWDGVVPQPAILKPQPLWTGKQIFSLILPKVNISRTNITHGDADDSPMSVSDTKVVISSGILLCGIVDKKTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWG1_9FLOR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Marionella schmitziana TaxID=756402 RepID=D8UWG1_9FLOR)

HSP 1 Score: 157 bits (398), Expect = 1.250e-44
Identity = 78/129 (60.47%), Postives = 94/129 (72.87%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE QELM+VP  IVSPQSNKPVMGI+QD+LLG    T+RDTF+ERD +MN+LM +G WDG VP PAILKPRPLWTGKQ+F+LI P VNL+     HP      ++     V +  GEL+ G VDKKTV
Sbjct:   21 RAEVQELMLVPHCIVSPQSNKPVMGIIQDTLLGCMLFTQRDTFLERDFVMNMLMHVGDWDGTVPHPAILKPRPLWTGKQIFSLILPPVNLTRTNITHPDEEDTPMSPGDTLVYISNGELVCGIVDKKTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWF3_9FLOR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Acrothamnion preissii TaxID=756384 RepID=D8UWF3_9FLOR)

HSP 1 Score: 157 bits (398), Expect = 1.250e-44
Identity = 77/129 (59.69%), Postives = 94/129 (72.87%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE QELM+VP  IVSPQ NKPVMGIVQD+LLG    T+RDTF+ERDLMMN+LM +G WDG +P PAILKPRPLWTGKQ+F+LI P +NL      HP      ++    +V + +G L+ G VDKKTV
Sbjct:   21 RAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDLMMNMLMHVGDWDGIIPEPAILKPRPLWTGKQIFSLILPPINLIRFNITHPDEEKTDMSPGDTKVFISKGHLVCGIVDKKTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: D8UWH2_9FLOR (DNA-directed RNA polymerase (Fragment) n=4 Tax=Ceramiaceae TaxID=31377 RepID=D8UWH2_9FLOR)

HSP 1 Score: 156 bits (395), Expect = 3.490e-44
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 0
Query:    6 KAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV 134
            +AE QELM+VP  I+SPQ N PVMGI+QD+LLG    T+RDTF+ERD +MNLLM +G WDG +P PAILKP+PLWTGKQ+F+LI P VNLS   + HP      ++    +V +  G LI G VDKKTV
Sbjct:   21 RAEVQELMLVPHCIISPQGNSPVMGIIQDTLLGCMLFTQRDTFLERDFVMNLLMHVGDWDGVIPQPAILKPKPLWTGKQIFSLILPDVNLSRLNKTHPDDEKAEISPGDTKVFISRGVLICGIVDKKTV 149          
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Match: A0A7S2DGX7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGX7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.720e-44
Identity = 75/131 (57.25%), Postives = 102/131 (77.86%), Query Frame = 0
Query:    5 AKAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVERDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGRVHPMPGL-GLLNDDSPQVLVLEGELIMGHVDKKTV 134
            A+AEA++LM+V + IVSPQSNKPVMGIVQDSL+ V ++TKR TF+E+D+  N LM +  W+GK+PAPAI+KP+ LWTGKQ+F++ICPK+NL  K    P   +   LN    +VL+L+G+L+MG +DKKTV
Sbjct:  104 ARAEAEQLMLVSRLIVSPQSNKPVMGIVQDSLIAVQRLTKRSTFIEKDVFFNTLMWVKKWNGKIPAPAIVKPKALWTGKQVFSMICPKINLRSKNNAFPKGNVPSTLNLYDGEVLILDGQLVMGIIDKKTV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109963.807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE4.120e-6077.44DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI2.150e-5572.34DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA7.100e-5067.67DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8UWF5_9FLOR1.120e-4561.24DNA-directed RNA polymerase (Fragment) n=2 Tax=Rho... [more]
D8UWF4_9FLOR2.230e-4559.69DNA-directed RNA polymerase (Fragment) n=1 Tax=Ant... [more]
D8UWG6_9FLOR1.250e-4459.69DNA-directed RNA polymerase (Fragment) n=8 Tax=Rho... [more]
D8UWG1_9FLOR1.250e-4460.47DNA-directed RNA polymerase (Fragment) n=1 Tax=Mar... [more]
D8UWF3_9FLOR1.250e-4459.69DNA-directed RNA polymerase (Fragment) n=1 Tax=Acr... [more]
D8UWH2_9FLOR3.490e-4458.14DNA-directed RNA polymerase (Fragment) n=4 Tax=Cer... [more]
A0A7S2DGX7_9STRA3.720e-4457.25DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 18..134
e-value: 7.3E-33
score: 113.7
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100coord: 19..134
e-value: 1.5E-35
score: 124.1
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..133
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 2..133
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109963contigH-elongata_contig109963:219..1953 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109963.807.1mRNA_H-elongata_contig109963.807.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig109963 219..1953 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig109963.807.1 ID=prot_H-elongata_contig109963.807.1|Name=mRNA_H-elongata_contig109963.807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
KSLLAKAEAQELMMVPKNIVSPQSNKPVMGIVQDSLLGVCKMTKRDTFVE
RDLMMNLLMSIGTWDGKVPAPAILKPRPLWTGKQMFTLICPKVNLSEKGR
VHPMPGLGLLNDDSPQVLVLEGELIMGHVDKKTV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007066RNA_pol_Rpb1_3
IPR042102RNA_pol_Rpb1_3_sf