prot_H-elongata_contig109409.765.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig109409.765.1
Unique Nameprot_H-elongata_contig109409.765.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: D8LC63_ECTSI (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC63_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.250e-28
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 54
            LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKL DVQVVDAERYPQL
Sbjct:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQL 54          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S3PVL2_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVL2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.740e-25
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 57
            QLFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL+ L
Sbjct:   12 QLFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLAL 68          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A8J9SEU0_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SEU0_PHATR)

HSP 1 Score: 97.4 bits (241), Expect = 3.880e-25
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    1 QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 57
            Q+F SFFKTLVGKE+AVELKNDV LTGTLHSVDQYLN+KLI VQVV  ERYPQLV L
Sbjct:    1 QIFLSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNIKLIHVQVVQPERYPQLVAL 57          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S2U7M8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7M8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-25
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 57
            LFYSFFKTLVGKE+A+ELKNDV LTGTLHSVDQYLNVKL DVQVV+ E+YPQLV L
Sbjct:   39 LFYSFFKTLVGKEVAIELKNDVVLTGTLHSVDQYLNVKLTDVQVVNKEQYPQLVPL 94          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A6U3SK19_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SK19_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.890e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 54
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL DVQVVDAER+PQL
Sbjct:    6 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDAERFPQL 57          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A8J2SX90_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX90_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.650e-25
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLV 55
            LFYS FKTLVGKEIAVELKNDVALTGTLHS+DQYLN+KL+D +VVDA R+PQLV
Sbjct:    2 LFYSMFKTLVGKEIAVELKNDVALTGTLHSIDQYLNIKLLDARVVDAARHPQLV 55          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S3PVB5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.370e-24
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQLVRL 57
            LFYSFFKTLVGKE+AVELKNDV LTGTLHSVDQYLNVKL +VQVVD ++YPQL+ L
Sbjct:   44 LFYSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNVKLNNVQVVDKQKYPQLLAL 99          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A835YRK1_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.010e-24
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 54
            LFYSFFKTLVGKE+AVELKNDV+LTGTLHSVDQYLNVKL  V+VVD ER+PQL
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVSLTGTLHSVDQYLNVKLTGVKVVDEERFPQL 54          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A4D9DC94_9STRA (U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC94_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.060e-24
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 0
Query:    2 LFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 54
            LFYSFFKTLVGKE+AVELKNDV LTG LHSVDQYLNVKL DVQVV  ERYPQL
Sbjct:    2 LFYSFFKTLVGKEVAVELKNDVELTGKLHSVDQYLNVKLEDVQVVKKERYPQL 54          
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Match: A0A7S2RW57_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW57_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.290e-24
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    3 FYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAERYPQL 54
            F SFFKTL+GKEIAVELKNDVALTGTLHSVDQYLN+KL DVQVVD+ER+PQL
Sbjct:   49 FNSFFKTLIGKEIAVELKNDVALTGTLHSVDQYLNIKLTDVQVVDSERFPQL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109409.765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC63_ECTSI6.250e-2898.11U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=E... [more]
A0A7S3PVL2_9STRA1.740e-2584.21U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=C... [more]
A0A8J9SEU0_PHATR3.880e-2584.21Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S2U7M8_9STRA3.910e-2585.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3SK19_9STRA6.890e-2590.38U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=D... [more]
A0A8J2SX90_9STRA9.650e-2585.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3PVB5_9STRA2.370e-2483.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A835YRK1_9STRA3.010e-2486.79U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=T... [more]
A0A4D9DC94_9STRA6.060e-2488.68U6 snRNA-associated Sm-like protein LSm2 n=1 Tax=N... [more]
A0A7S2RW57_9STRA7.290e-2488.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..48
e-value: 7.1E-11
score: 41.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..57
e-value: 2.2E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR13829:SF2U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2coord: 2..55
IPR016654U6 snRNA-associated Sm-like protein LSm2PANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 2..55
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109409contigH-elongata_contig109409:1617..1787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109409.765.1mRNA_H-elongata_contig109409.765.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig109409 1617..1787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig109409.765.1 ID=prot_H-elongata_contig109409.765.1|Name=mRNA_H-elongata_contig109409.765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLIDVQVVDAER
YPQLVRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016654U6_snRNA_Lsm2
IPR010920LSM_dom_sf