prot_H-elongata_contig108536.696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108536.696.1
Unique Nameprot_H-elongata_contig108536.696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length75
Homology
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.750e-37
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0 
Query:    1 MMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLPLPPSVKANRKTIADVVEALLG 74
            +MEEGMMTLLRKNVVSNARL+KCADGRGLREFMYPPRSILGRPF+MWSPSLLPLPP VKA++KTIADVVEALLG
Sbjct: 1190 LMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLG 1263
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.770e-37
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 0 
Query:    1 MMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLPLPPSVKANRKTIADVVEALLG 74
            +MEEGMMTLLRKNVVSNARL+KCADGRGLREFMYPPRSILGRPF+MWSPSLLPLPP VKA++KTIADVVEALLG
Sbjct: 1836 LMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLG 1909
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 99.4 bits (246), Expect = 1.330e-22
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 0 
Query:    1 MMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLP 53
            M EEGMMT LRKN+VSNARL+KCADGRGLREF+YPPR+ILG+PFEMW+PSLLP
Sbjct: 1066 MREEGMMTFLRKNIVSNARLVKCADGRGLREFIYPPRTILGQPFEMWAPSLLP 1118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZW2_ECTSI4.750e-3791.89Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KQM7_9PHAE4.770e-3791.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S1PRV6_FUCSE1.330e-2284.91Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10coord: 1..74
e-value: 4.7E-9
score: 37.9
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 2..74
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 3..74
e-value: 9.9E-7
score: 29.3
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 1..74
score: 10.525

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108536contigH-elongata_contig108536:1003..1871 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108536.696.1mRNA_H-elongata_contig108536.696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108536 1003..1886 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108536.696.1 ID=prot_H-elongata_contig108536.696.1|Name=mRNA_H-elongata_contig108536.696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPS
LLPLPPSVKANRKTIADVVEALLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036389RNase_III_sf
IPR000999RNase_III_dom