mRNA_H-elongata_contig108536.696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig108536.696.1
Unique NamemRNA_H-elongata_contig108536.696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.190e-41
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 QDKPVMMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLPLPPSVKANRKTIADVVEALLG 237
            QDKPV+MEEGMMTLLRKNVVSNARL+KCADGRGLREFMYPPRSILGRPF+MWSPSLLPLPP VKA++KTIADVVEALLG
Sbjct: 1185 QDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLG 1263
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.420e-40
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    4 DKPVMMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLPLPPSVKANRKTIADVVEALLG 237
            DKPV+MEEGMMTLLRKNVVSNARL+KCADGRGLREFMYPPRSILGRPF+MWSPSLLPLPP VKA++KTIADVVEALLG
Sbjct: 1832 DKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLG 1909
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BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 110 bits (275), Expect = 1.980e-26
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 QDKPVMMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPSLLP 174
            QDKPVM EEGMMT LRKN+VSNARL+KCADGRGLREF+YPPR+ILG+PFEMW+PSLLP
Sbjct: 1061 QDKPVMREEGMMTFLRKNIVSNARLVKCADGRGLREFIYPPRTILGQPFEMWAPSLLP 1118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108536.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZW2_ECTSI7.190e-4192.41Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KQM7_9PHAE3.420e-4092.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2S1PRV6_FUCSE1.980e-2686.21Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108536contigH-elongata_contig108536:1003..1886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.8e-31
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108536.696.1prot_H-elongata_contig108536.696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig108536 1003..1871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.71137-CDS-H-elongata_contig108536:1002..11371622929613.71137-CDS-H-elongata_contig108536:1002..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108536 1003..1137 -
1691679091.5607803-CDS-H-elongata_contig108536:1002..11371691679091.5607803-CDS-H-elongata_contig108536:1002..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108536 1003..1137 -
1622929613.7266204-CDS-H-elongata_contig108536:1781..18711622929613.7266204-CDS-H-elongata_contig108536:1781..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108536 1782..1871 -
1691679091.5728323-CDS-H-elongata_contig108536:1781..18711691679091.5728323-CDS-H-elongata_contig108536:1781..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig108536 1782..1871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.744558-UTR-H-elongata_contig108536:1871..18861622929613.744558-UTR-H-elongata_contig108536:1871..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108536 1872..1886 -
1691679091.5815759-UTR-H-elongata_contig108536:1871..18861691679091.5815759-UTR-H-elongata_contig108536:1871..1886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig108536 1872..1886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig108536.696.1

>prot_H-elongata_contig108536.696.1 ID=prot_H-elongata_contig108536.696.1|Name=mRNA_H-elongata_contig108536.696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MMEEGMMTLLRKNVVSNARLIKCADGRGLREFMYPPRSILGRPFEMWSPS
LLPLPPSVKANRKTIADVVEALLG*
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mRNA from alignment at H-elongata_contig108536:1003..1886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig108536.696.1 ID=mRNA_H-elongata_contig108536.696.1|Name=mRNA_H-elongata_contig108536.696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig108536:1003..1886- (Himanthalia elongata Himel1 dioecious)
CAGGACAAGCCTGTTATGATGGAAGAGGGCATGATGACCCTTCTGAGAAA
AAACGTCGTGTCAAACGCGCGCCTTATCAAATGCGCCGACGGCCGCGGTC
TAAGGGTAAGTGAAACAGGGAGGAGTATTATTTGGCGAGGGGGGGCCGGG
TGAGAAGTCGATTTCACGTATAGTATGTAAGTATTTATGTATTTATGGTC
GATGGTCGCACATTTAGCAGAGGGATCAACCGGATTTGGTTTTTCCTTCT
ACTCGTGGTCAGCTGAACAGGGATAATAATTTTCCCCTGTCCCCATTCGT
GTCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCAGTCCCGTCCCTCGTC
AGCCTGTTATTTCTCTTGATTTTTCACCGCCTCCTCCTGGAGACAGTTTT
AGCCAACCCACCAATGATATTCTTCGTTTTCGGGGCAATATTCTAGAACC
TAATCAGCTAAGAAGTTGGGCAGCCCCTCCATGGGAGGGGCTGTTTAAAA
AACCGCCCCGCCCTGGATCCTGTGACCTATTTATAACACTCCCCTAACCT
CCATCTCTGCTCCTGCGCCTCTCGCATCTCTCCCCCCGCACGAATAATGT
CATTTATTCCCCGGCGCACATGCTCAGGAGGGTTTGTTGCACCTCCCCCC
CCCCCATCCCCTGAATCCGGGGATAATTTTGTAACACCCCCTCCCCCCTT
CCTACCCCCGTCTCTGTCCCTGCGCGCCCACCTGTTTCCCGCTGCGCAGG
AGTTTATGTACCCTCCGCGGTCCATCCTTGGTCGACCGTTCGAGATGTGG
TCGCCTTCTCTGCTGCCCTTGCCCCCCTCGGTAAAGGCCAACCGGAAAAC
CATCGCGGACGTTGTGGAGGCGCTCCTAGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig108536:1003..1886-

>mRNA_H-elongata_contig108536.696.1 ID=mRNA_H-elongata_contig108536.696.1|Name=mRNA_H-elongata_contig108536.696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig108536:1003..1886- (Himanthalia elongata Himel1 dioecious)
ATGATGGAAGAGGGCATGATGACCCTTCTGAGAAAAAACGTCGTGTCAAA
CGCGCGCCTTATCAAATGCGCCGACGGCCGCGGTCTAAGGATGATGGAAG
AGGGCATGATGACCCTTCTGAGAAAAAACGTCGTGTCAAACGCGCGCCTT
ATCAAATGCGCCGACGGCCGCGGTCTAAGGGAGTTTATGTACCCTCCGCG
GTCCATCCTTGGTCGACCGTTCGAGATGTGGTCGCCTTCTCTGCTGCCCT
TGCCCCCCTCGGTAAAGGCCAACCGGAAAACCATCGCGGACGTTGTGGAG
GCGCTCCTAGGGTAAGAGTTTATGTACCCTCCGCGGTCCATCCTTGGTCG
ACCGTTCGAGATGTGGTCGCCTTCTCTGCTGCCCTTGCCCCCCTCGGTAA
AGGCCAACCGGAAAACCATCGCGGACGTTGTGGAGGCGCTCCTAGGGTAA
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