prot_H-elongata_contig106563.540.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig106563.540.1
Unique Nameprot_H-elongata_contig106563.540.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length260
Homology
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.870e-52
Identity = 86/152 (56.58%), Postives = 120/152 (78.95%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQ 152
            GE++PIVE Y YLG+ F+R L+V  +MG++++AG +LV  + P+L C  IP+P+KVAVVRGV+ PRLL+GAEV+GM   IT+R+Q ++N   RMV GMSP+ATVS+VALWRE+ IPPICASAAARRAR +QK   + TW+ +++  P++ R+
Sbjct:  815 GETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRK 966          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.880e-33
Identity = 62/153 (40.52%), Postives = 96/153 (62.75%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGG-DMNTWVTTLIHTPFRSRQ 152
            G +VPIVE Y YLG+     L     + DR++  RRL G++  FLR   +P+  + AV R V+ P + YGAE++  NK  T   Q+F+N  L+++ G++    VSNVALW E G+PP+CA+A  +RAR L KGG ++ TW+  ++   +++R+
Sbjct:  194 GAAVPIVESYTYLGLEIRPDLSRQGTIADRLAKARRLAGSMHSFLRRQDVPIQFRTAVARTVLIPAITYGAEIFAFNKSFTRGAQQFINTQLKLIAGVARGQAVSNVALWHEFGVPPLCATANGQRARLLSKGGRELRTWLAKMVERGYKARR 346          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 8.200e-30
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 0
Query:   34 GRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQ----AGGCPWL 159
            GR+    ++PFL C  IPL ++  ++  V+  RLLYGAE+YGMNK +T   Q+ L+E+L++++G+SP+  VS + LW E GIPPI A AA+RRAR  QK  ++ T +TTLI +P+RS Q    +G   WL
Sbjct:    9 GRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWL 138          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A0R0M3M1_9MICR (Putative endonuclease-reverse transcriptase n=2 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0M3M1_9MICR)

HSP 1 Score: 88.6 bits (218), Expect = 2.190e-16
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 0
Query:    2 ESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQA 153
            E+VP V EY YLG+ F  SL++ +++      GRR V      L   ++PL +K+ V R V+ P L +G+E++GM     + +Q+ L    RMV+       +    L +++G+  I  +AAA RARA++K  +  TWV  LI  P   R+A
Sbjct:  122 ETVPHVHEYVYLGVLFSESLQMEEMIRRNAEKGRRAVIAHSGLLTDPNVPLFIKLLVTRTVIKPILTFGSELWGMASVRVTPLQRILAMAYRMVLRTGKALNLHR--LDKQLGVAGIAETAAAMRARAIEKWCEARTWVAELIRRPASHRKA 271          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR)

HSP 1 Score: 84.3 bits (207), Expect = 7.330e-15
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNT 138
            G ++P  + Y YLG+   R+L    +   R   G   +  L+  LR  S+ +  K  +V+G++ P +LYGAEVYG   + TS  Q  +N+ LRMV G     T    A+WR++G+ P+ A+AA+R+ RA  K   + T
Sbjct:  264 GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WJX7_9MICR (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WJX7_9MICR)

HSP 1 Score: 82.8 bits (203), Expect = 2.910e-14
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIH 145
            G+ V   E Y YLG+    +L + K+   R   G   +  L+  LR   +P+  K  ++RG+V P + YGAE YG    IT  +QK  N  L+++ G     T    A+ R++GIPPI A+A   + RAL+K   + T V  +++
Sbjct:  711 GKDVVAGESYTYLGIMLDETLSLKKMALGRKKKGVGALALLEKSLRGTVLPIEYKALLIRGLVIPAMSYGAEAYGSTAAITWELQKVANIALKIISGNECSLT----AVRRDLGIPPIQATAVGAQNRALKKFPTLKTEVARILN 851          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-13
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 0
Query:    4 VPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNT 138
            +P V+ Y YLG+   ++L    ++  R   G   V  L+  LR  S+ +  K  +V+G+V P +LYGAEVYG     T  MQ  +N+ L+MV G     T    A+ R++G+ PI A+AA R+ RA  K  ++ T
Sbjct:  697 IPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAGNCCALT----AVRRDLGMMPIQAAAAGRQERAWAKFPNLRT 827          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A196SEG4_BLAHN (Retroelement n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SEG4_BLAHN)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-13
Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLI 144
            G  +P+V+EYKYLG+     L  ++++  R+ A   ++  ++  L   SIP  ++V +++    P LLYG +V+G  K   +R+Q+ +N  L M++      +VS +AL  E+G+ PI  +A  RR      G   +  + +LI
Sbjct:  262 GNRIPVVKEYKYLGVVIRNDLNRSRMIEARILAATSVLNQIQYLLMNPSIPASLRVRILKVKWIPVLLYGVQVWGGVKEDDARVQRLVNRALSMILQGWSEKSVSTMALLLELGLEPIHVTALIRRMDMFLSGRYTSAMLRSLI 405          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WVJ6_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WVJ6_9MICR)

HSP 1 Score: 76.6 bits (187), Expect = 2.500e-12
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 0
Query:    1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQK 132
            G ++P  + Y YLG+   R+L    +   R   G   +  L+  LR  S+ +  K  +V+G++ P +LYGAEVYG   + TS  Q  +N+ +RM+ G     T    A+ R++G+ P+ A+AA+R+ RA  K
Sbjct:  264 GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTVLYGAEVYGSIGKTTSGAQVVVNKAVRMIAGNGGALT----AVRRDLGVIPVQAAAASRQRRAWLK 391          
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A401H027_9APHY (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H027_9APHY)

HSP 1 Score: 75.5 bits (184), Expect = 9.260e-12
Identity = 44/159 (27.67%), Postives = 85/159 (53.46%), Query Frame = 0
Query:    4 VPIVEEYKYLGMSFHRSLEVAK--------LMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNV-ALWREIGIPPICASAAARRARA---LQKGGDMNTWVTTLIHTPFRS 150
            +PIV+EYKYLG++  +S+  ++         +  + + G +++  ++P LR    P+ +K  V+R ++  ++LYG+E  G        +Q+ +N+ L++ +G S ++   +  +L  E+G+P I     A RAR    LQ    + TW+  L   P+R+
Sbjct:  970 LPIVDEYKYLGITMQKSVGDSRGKDGNELAFVKLQAAKGEKVLNVIRPLLRDPKWPMSIKATVIRTILMSKMLYGSEWVGYKLAHAVPIQRIVNKALKLAMGSSSKSRQYDCYSLGYELGLPSIAEEQNALRARLSAKLQYSDGIKTWLKELSQHPYRA 1128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE4.870e-5256.58Reverse transcriptase domain-containing protein n=... [more]
A0A2R5FKX6_9STRA2.880e-3340.52Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A7S3PFX4_9STRA8.200e-3046.92Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A0R0M3M1_9MICR2.190e-1634.87Putative endonuclease-reverse transcriptase n=2 Ta... [more]
A0A1J5WU32_9MICR7.330e-1535.51Reverse transcriptase domain-containing protein n=... [more]
A0A1J5WJX7_9MICR2.910e-1433.79Reverse transcriptase domain-containing protein (F... [more]
A0A1J5WUS4_9MICR1.300e-1336.30Reverse transcriptase domain-containing protein n=... [more]
A0A196SEG4_BLAHN2.600e-1330.56Retroelement n=1 Tax=Blastocystis sp. subtype 1 (s... [more]
A0A1J5WVJ6_9MICR2.500e-1234.09Reverse transcriptase domain-containing protein n=... [more]
A0A401H027_9APHY9.260e-1227.67LINE-1 retrotransposable element ORF2 protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47027:SF5coord: 1..152
NoneNo IPR availablePANTHERPTHR47027FAMILY NOT NAMEDcoord: 1..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106563contigH-elongata_contig106563:942..1964 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106563.540.1mRNA_H-elongata_contig106563.540.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig106563 942..1964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig106563.540.1 ID=prot_H-elongata_contig106563.540.1|Name=mRNA_H-elongata_contig106563.540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSI
PLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSP
RATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRS
RQAGGCPWLAYGLTLIVKYRVGGFWTAKRLARRNLLPSRFRRMCPCCGER
VPETLAHILLDCKRWQRGRREVLEYPSASALSIIGTAPSSNENDIVTLLL
GGEFKGSSIR
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