mRNA_H-elongata_contig106563.540.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.870e-52 Identity = 86/152 (56.58%), Postives = 120/152 (78.95%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQ 456
GE++PIVE Y YLG+ F+R L+V +MG++++AG +LV + P+L C IP+P+KVAVVRGV+ PRLL+GAEV+GM IT+R+Q ++N RMV GMSP+ATVS+VALWRE+ IPPICASAAARRAR +QK + TW+ +++ P++ R+
Sbjct: 815 GETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRK 966
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.880e-33 Identity = 62/153 (40.52%), Postives = 96/153 (62.75%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGG-DMNTWVTTLIHTPFRSRQ 456
G +VPIVE Y YLG+ L + DR++ RRL G++ FLR +P+ + AV R V+ P + YGAE++ NK T Q+F+N L+++ G++ VSNVALW E G+PP+CA+A +RAR L KGG ++ TW+ ++ +++R+
Sbjct: 194 GAAVPIVESYTYLGLEIRPDLSRQGTIADRLAKARRLAGSMHSFLRRQDVPIQFRTAVARTVLIPAITYGAEIFAFNKSFTRGAQQFINTQLKLIAGVARGQAVSNVALWHEFGVPPLCATANGQRARLLSKGGRELRTWLAKMVERGYKARR 346
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA) HSP 1 Score: 124 bits (312), Expect = 8.200e-30 Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 100 GRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQ----AGGCPWL 477
GR+ ++PFL C IPL ++ ++ V+ RLLYGAE+YGMNK +T Q+ L+E+L++++G+SP+ VS + LW E GIPPI A AA+RRAR QK ++ T +TTLI +P+RS Q +G WL
Sbjct: 9 GRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWL 138
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A0R0M3M1_9MICR (Putative endonuclease-reverse transcriptase n=2 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0M3M1_9MICR) HSP 1 Score: 88.6 bits (218), Expect = 2.190e-16 Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 4 ESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIHTPFRSRQA 459
E+VP V EY YLG+ F SL++ +++ GRR V L ++PL +K+ V R V+ P L +G+E++GM + +Q+ L RMV+ + L +++G+ I +AAA RARA++K + TWV LI P R+A
Sbjct: 122 ETVPHVHEYVYLGVLFSESLQMEEMIRRNAEKGRRAVIAHSGLLTDPNVPLFIKLLVTRTVIKPILTFGSELWGMASVRVTPLQRILAMAYRMVLRTGKALNLHR--LDKQLGVAGIAETAAAMRARAIEKWCEARTWVAELIRRPASHRKA 271
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR) HSP 1 Score: 84.3 bits (207), Expect = 7.330e-15 Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNT 414
G ++P + Y YLG+ R+L + R G + L+ LR S+ + K +V+G++ P +LYGAEVYG + TS Q +N+ LRMV G T A+WR++G+ P+ A+AA+R+ RA K + T
Sbjct: 264 GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WJX7_9MICR (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WJX7_9MICR) HSP 1 Score: 82.8 bits (203), Expect = 2.910e-14 Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLIH 435
G+ V E Y YLG+ +L + K+ R G + L+ LR +P+ K ++RG+V P + YGAE YG IT +QK N L+++ G T A+ R++GIPPI A+A + RAL+K + T V +++
Sbjct: 711 GKDVVAGESYTYLGIMLDETLSLKKMALGRKKKGVGALALLEKSLRGTVLPIEYKALLIRGLVIPAMSYGAEAYGSTAAITWELQKVANIALKIISGNECSLT----AVRRDLGIPPIQATAVGAQNRALKKFPTLKTEVARILN 851
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR) HSP 1 Score: 80.9 bits (198), Expect = 1.300e-13 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query: 10 VPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNT 414
+P V+ Y YLG+ ++L ++ R G V L+ LR S+ + K +V+G+V P +LYGAEVYG T MQ +N+ L+MV G T A+ R++G+ PI A+AA R+ RA K ++ T
Sbjct: 697 IPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAGNCCALT----AVRRDLGMMPIQAAAAGRQERAWAKFPNLRT 827
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A196SEG4_BLAHN (Retroelement n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SEG4_BLAHN) HSP 1 Score: 79.7 bits (195), Expect = 2.600e-13 Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQKGGDMNTWVTTLI 432
G +P+V+EYKYLG+ L ++++ R+ A ++ ++ L SIP ++V +++ P LLYG +V+G K +R+Q+ +N L M++ +VS +AL E+G+ PI +A RR G + + +LI
Sbjct: 262 GNRIPVVKEYKYLGVVIRNDLNRSRMIEARILAATSVLNQIQYLLMNPSIPASLRVRILKVKWIPVLLYGVQVWGGVKEDDARVQRLVNRALSMILQGWSEKSVSTMALLLELGLEPIHVTALIRRMDMFLSGRYTSAMLRSLI 405
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A1J5WVJ6_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WVJ6_9MICR) HSP 1 Score: 76.6 bits (187), Expect = 2.500e-12 Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 1 GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNVALWREIGIPPICASAAARRARALQK 396
G ++P + Y YLG+ R+L + R G + L+ LR S+ + K +V+G++ P +LYGAEVYG + TS Q +N+ +RM+ G T A+ R++G+ P+ A+AA+R+ RA K
Sbjct: 264 GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTVLYGAEVYGSIGKTTSGAQVVVNKAVRMIAGNGGALT----AVRRDLGVIPVQAAAASRQRRAWLK 391
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Match: A0A401H027_9APHY (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H027_9APHY) HSP 1 Score: 75.5 bits (184), Expect = 9.260e-12 Identity = 44/159 (27.67%), Postives = 85/159 (53.46%), Query Frame = 1
Query: 10 VPIVEEYKYLGMSFHRSLEVAK--------LMGDRVSAGRRLVGTLKPFLRCNSIPLPMKVAVVRGVVCPRLLYGAEVYGMNKRITSRMQKFLNETLRMVVGMSPRATVSNV-ALWREIGIPPICASAAARRARA---LQKGGDMNTWVTTLIHTPFRS 450
+PIV+EYKYLG++ +S+ ++ + + + G +++ ++P LR P+ +K V+R ++ ++LYG+E G +Q+ +N+ L++ +G S ++ + +L E+G+P I A RAR LQ + TW+ L P+R+
Sbjct: 970 LPIVDEYKYLGITMQKSVGDSRGKDGNELAFVKLQAAKGEKVLNVIRPLLRDPKWPMSIKATVIRTILMSKMLYGSEWVGYKLAHAVPIQRIVNKALKLAMGSSSKSRQYDCYSLGYELGLPSIAEEQNALRARLSAKLQYSDGIKTWLKELSQHPYRA 1128 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106563.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106563.540.1 >prot_H-elongata_contig106563.540.1 ID=prot_H-elongata_contig106563.540.1|Name=mRNA_H-elongata_contig106563.540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp GESVPIVEEYKYLGMSFHRSLEVAKLMGDRVSAGRRLVGTLKPFLRCNSIback to top mRNA from alignment at H-elongata_contig106563:942..1964+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106563.540.1 ID=mRNA_H-elongata_contig106563.540.1|Name=mRNA_H-elongata_contig106563.540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig106563:942..1964+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106563:942..1964+ >mRNA_H-elongata_contig106563.540.1 ID=mRNA_H-elongata_contig106563.540.1|Name=mRNA_H-elongata_contig106563.540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig106563:942..1964+ (Himanthalia elongata Himel1 dioecious)back to top |