prot_H-elongata_contig1054.447.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1054.447.1
Unique Nameprot_H-elongata_contig1054.447.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length535
Homology
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BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI)

HSP 1 Score: 543 bits (1399), Expect = 4.030e-184
Identity = 284/529 (53.69%), Postives = 382/529 (72.21%), Query Frame = 0 
Query:    2 FGFLAFIAMLVMCCRCKRLHHEDVAIVQAEADSEGKGLEDMYEIEDYEDKISRHRKILWVSCFIIFMGYLFCAGYTYIGARTTDAAFDDIFDGIDVLVTKLQTALCAENGSSECENQSVGDFLLDIADAVFDQFDGIVEFLSSLSAVATPLYWVSANLTTAGTVINGTEKSVLNINESISNINLIFNGDGNVADVADGSAIPTLDASILEDVAEGKSAIATAKTLTEDSIVEVEDQLFGSSSTITRIEYQLDDIHGNEIDDDEDVRNSSLEAVYE-VLEPIHDMTEAMYEFQNNELVDARHIVEEYLETSVHAVVAIIFLPGVILLLTSICSGMFQSSKPLYLNMCFVFLSQIVFCLVAGVFLAASKINGDVCDNHLELVEANLQNEYNISVEDTVVTLTYDKVYLILTCDGIPGDVPTETNNFVSILEAEQACHVFNMSKQLETASSVITNSSDLLLSPKSTVIDAQDELSLLSDFVNMTIGDDVDIAELSDEINDLLDEMPPSPFNWDSRVHQDALDNFYLSNVTEF 529
            FG LAF+ ML MCCRCKRLH  D+AI +AE D++GKGL+DMYEIEDYED IS+HRKILW+  FIIF+GYLFCAGY Y GA TTD++F  IFDG DVL+T+ Q ALCAENGS++C + SVGDF+L+I+ A+ D+ +G+V+F+SSLSAV  PL  VSANL TA  V++ TE +V+NIN SI+++N I  GDG VA++ DG  I  +D  +L D+ +G+ A+  A  LTE S +E+ +QL G+ S ITRI+YQLDD+HGNEI  DED+RN++L  V + VL+P+ D+T  +Y+ QN+++ + R  +E YL+ +V AV  IIFLPGVIL LTS+CSG+ QSSK                            INGD+CD+H+ L+EANL  E+N +V+D  + + + KV  ILTC G  GD PT++NNFV ILE +Q   +FN+S  L+ ASS+IT++S LL  PK +V+DAQ EL  L DFV      D+D++ELSDEI+DLL++MPPSP +WD R HQD++D+FYL+NV+ +
Sbjct:   69 FGLLAFLGMLAMCCRCKRLHRADLAIAEAEGDNDGKGLDDMYEIEDYEDNISKHRKILWLFSFIIFLGYLFCAGYAYNGAETTDSSFGSIFDGTDVLLTRAQEALCAENGSADCADGSVGDFMLEISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVVDTTEMAVININNSITSVNAIITGDGPVAELMDGETIANIDGDVLHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIKYQLDDVHGNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSK----------------------------INGDLCDHHMALIEANLP-EFNTTVQDVEILVDFPKVEKILTCSGDAGDTPTDSNNFVDILEIQQ---IFNISSTLKEASSLITDNSALLAEPKDSVLDAQSELGPLDDFVETDFVGDIDMSELSDEIDDLLEDMPPSPLDWDDRDHQDSVDSFYLNNVSGY 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC8_ECTSI4.030e-18453.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 336..340
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 366..534
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 310..335
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 341..365
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..309
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..57
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.79
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 341..363
NoneNo IPR availableTMHMMTMhelixcoord: 309..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1054contigH-elongata_contig1054:2375..8480 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1054.447.1mRNA_H-elongata_contig1054.447.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1054 1683..11705 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1054.447.1 ID=prot_H-elongata_contig1054.447.1|Name=mRNA_H-elongata_contig1054.447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=535bp
MFGFLAFIAMLVMCCRCKRLHHEDVAIVQAEADSEGKGLEDMYEIEDYED
KISRHRKILWVSCFIIFMGYLFCAGYTYIGARTTDAAFDDIFDGIDVLVT
KLQTALCAENGSSECENQSVGDFLLDIADAVFDQFDGIVEFLSSLSAVAT
PLYWVSANLTTAGTVINGTEKSVLNINESISNINLIFNGDGNVADVADGS
AIPTLDASILEDVAEGKSAIATAKTLTEDSIVEVEDQLFGSSSTITRIEY
QLDDIHGNEIDDDEDVRNSSLEAVYEVLEPIHDMTEAMYEFQNNELVDAR
HIVEEYLETSVHAVVAIIFLPGVILLLTSICSGMFQSSKPLYLNMCFVFL
SQIVFCLVAGVFLAASKINGDVCDNHLELVEANLQNEYNISVEDTVVTLT
YDKVYLILTCDGIPGDVPTETNNFVSILEAEQACHVFNMSKQLETASSVI
TNSSDLLLSPKSTVIDAQDELSLLSDFVNMTIGDDVDIAELSDEINDLLD
EMPPSPFNWDSRVHQDALDNFYLSNVTEFRRVFE*
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