mRNA_H-elongata_contig1054.447.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI) HSP 1 Score: 603 bits (1555), Expect = 7.130e-202 Identity = 314/583 (53.86%), Postives = 422/583 (72.38%), Query Frame = 1
Query: 1 AAFVLTALLSVLSSVADGSIFNTPADELEEDDYVKYATEVGVATAGLGIGLSLMFGFLAFIAMLVMCCRCKRLHHEDVAIVQAEADSEGKGLEDMYEIEDYEDKISRHRKILWVSCFIIFMGYLFCAGYTYIGARTTDAAFDDIFDGIDVLVTKLQTALCAENGSSECENQSVGDFLLDIADAVFDQFDGIVEFLSSLSAVATPLYWVSANLTTAGTVINGTEKSVLNINESISNINLIFNGDGNVADVADGSAIPTLDASILEDVAEGKSAIATAKTLTEDSIVEVEDQLFGSSSTITRIEYQLDDIHGNEIDDDEDVRNSSLEAVYE-VLEPIHDMTEAMYEFQNNELVDARHIVEEYLETSVHAVVAIIFLPGVILLLTSICSGMFQSSKPLYLNMCFVFLSQIVFCLVAGVFLAASKINGDVCDNHLELVEANLQNEYNISVEDTVVTLTYDKVYLILTCDGIPGDVPTETNNFVSILEAEQACHVFNMSKQLETASSVITNSSDLLLSPKSTVIDAQDELSLLSDFVNMTIGDDVDIAELSDEINDLLDEMPPSPFNWDSRVHQDALDNFYLSNVTEF 1746
AA + L++ V GS+F+TPAD+LE++DY+ Y EVGVATAGLGIGLS+ FG LAF+ ML MCCRCKRLH D+AI +AE D++GKGL+DMYEIEDYED IS+HRKILW+ FIIF+GYLFCAGY Y GA TTD++F IFDG DVL+T+ Q ALCAENGS++C + SVGDF+L+I+ A+ D+ +G+V+F+SSLSAV PL VSANL TA V++ TE +V+NIN SI+++N I GDG VA++ DG I +D +L D+ +G+ A+ A LTE S +E+ +QL G+ S ITRI+YQLDD+HGNEI DED+RN++L V + VL+P+ D+T +Y+ QN+++ + R +E YL+ +V AV IIFLPGVIL LTS+CSG+ QSSK INGD+CD+H+ L+EANL E+N +V+D + + + KV ILTC G GD PT++NNFV ILE +Q +FN+S L+ ASS+IT++S LL PK +V+DAQ EL L DFV D+D++ELSDEI+DLL++MPPSP +WD R HQD++D+FYL+NV+ +
Sbjct: 15 AAMLCLPTLAMTLVVTKGSVFDTPADDLEQEDYIDYGQEVGVATAGLGIGLSIFFGLLAFLGMLAMCCRCKRLHRADLAIAEAEGDNDGKGLDDMYEIEDYEDNISKHRKILWLFSFIIFLGYLFCAGYAYNGAETTDSSFGSIFDGTDVLLTRAQEALCAENGSADCADGSVGDFMLEISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVVDTTEMAVININNSITSVNAIITGDGPVAELMDGETIANIDGDVLHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIKYQLDDVHGNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSK----------------------------INGDLCDHHMALIEANLP-EFNTTVQDVEILVDFPKVEKILTCSGDAGDTPTDSNNFVDILEIQQ---IFNISSTLKEASSLITDNSALLAEPKDSVLDAQSELGPLDDFVETDFVGDIDMSELSDEIDDLLEDMPPSPLDWDDRDHQDSVDSFYLNNVSGY 565
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Match: A0A835ZAU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU7_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 3.940e-11 Identity = 53/234 (22.65%), Postives = 92/234 (39.32%), Query Frame = 1
Query: 79 ELEEDDYVKYATEVGVATAGLGIGLSLMFGFLAFIAMLVMCCRCKRLHHEDVAIVQAEADSEGKGLEDMYEIEDYEDKISRH--------------------------------------------------------RKILWVSCFIIFMGYLFCAGYTYIGARTTDAAFDDIFDGIDVLVTKLQTALCAENGSSECENQSVGDFLLDIADAVFDQFDGIVEFLSSLSAVATP 612
+L++ + Y E+ ATAG+G+G++++FG + I LV C RC R+ D A+ + + + Y + D+ +H R+ LW + + + Y+ C +Y AR T DD +DG +T +Q ALC+ ++C + SVGD++L + + F V ++ LS V P
Sbjct: 36 KLQDPEVKSYGIEIVKATAGVGVGVAILFGIIMTICCLVSCVRCCRMGRRDRAVAEGSFLGDKAFPDADYAYHNIGDQARKHNWSTAVACTALSRRRIHPTATYLHCNLKSRPLRPHYEQQPLTAARARIRYARPARCRRYLWGATLALIIAYVACGAASYSAARKTLNTVDDAYDGTSAFLTDVQLALCSTGSDAKCADGSVGDYVLAVQTTMVGTFAAAVAWIDQLSGVQAP 269
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Match: A0A835ZCZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.420e-8 Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 2
Query: 2525 NEYFMAASNYTMCGYIGTFYEAVYLDAMCTDLQRNAEAVAGPAVCVVILMFVSFCVQGCYGPSMRKRPRHTAGVVD--GNKMVPN 2773
N FM A Y+MCG+IG FY++VYL A+C Q N +A P + V LM V+F + P+MR RP + V+D G PN
Sbjct: 79 NGVFMKADAYSMCGFIGDFYQSVYLGAVCEGFQGNLRDIAVPILFVACLMLVAFVLYAWLAPAMRARPEPSTLVLDKKGGGKSPN 163
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Match: D8LDC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC9_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.440e-8 Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 2
Query: 2672 MFVSFCVQGCYGPSMRKRPRHTAGVVDGNKMVPNDVAD 2785
MF+SFC+QGCYGPSMRKRPR AG DG K ND AD
Sbjct: 1 MFLSFCIQGCYGPSMRKRPRGPAGDFDGGKARLNDTAD 38 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1054.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1054.447.1 >prot_H-elongata_contig1054.447.1 ID=prot_H-elongata_contig1054.447.1|Name=mRNA_H-elongata_contig1054.447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=535bp MFGFLAFIAMLVMCCRCKRLHHEDVAIVQAEADSEGKGLEDMYEIEDYEDback to top mRNA from alignment at H-elongata_contig1054:1683..11705+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1054.447.1 ID=mRNA_H-elongata_contig1054.447.1|Name=mRNA_H-elongata_contig1054.447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=10023bp|location=Sequence derived from alignment at H-elongata_contig1054:1683..11705+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1054:1683..11705+ >mRNA_H-elongata_contig1054.447.1 ID=mRNA_H-elongata_contig1054.447.1|Name=mRNA_H-elongata_contig1054.447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3210bp|location=Sequence derived from alignment at H-elongata_contig1054:1683..11705+ (Himanthalia elongata Himel1 dioecious)back to top |