prot_H-elongata_contig103752.314.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig103752.314.1
Unique Nameprot_H-elongata_contig103752.314.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length44
Homology
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BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 0 
Query:    8 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 44
            VP++N+FSNP+V +LNKPTG   A+ AR IE++MV +
Sbjct:  544 VPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAV 580
[Close]
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.130e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    8 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 44
            VPR+N+FSNP+V +LNK TG   A+ AR IED+MV +
Sbjct:  364 VPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAV 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE2.740e-556.76LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE5.130e-559.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103752contigH-elongata_contig103752:297..428 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103752.314.1mRNA_H-elongata_contig103752.314.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig103752 297..440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig103752.314.1 ID=prot_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MAHTCNNVPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL
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