mRNA_H-elongata_contig103752.314.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 48.9 bits (115), Expect = 2.400e-5 Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 1 Query: 34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
VP++N+FSNP+V +LNKPTG A+ AR IE++MV +
Sbjct: 544 VPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAV 580
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 48.1 bits (113), Expect = 4.500e-5 Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
VPR+N+FSNP+V +LNK TG A+ AR IED+MV +
Sbjct: 364 VPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAV 400 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103752.314.1 >prot_H-elongata_contig103752.314.1 ID=prot_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp MAHTCNNVPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKLback to top mRNA from alignment at H-elongata_contig103752:297..440- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103752:297..440- >mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)back to top |