prot_H-elongata_contig103461.288.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig103461.288.1
Unique Nameprot_H-elongata_contig103461.288.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length56
Homology
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.390e-19
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRRLEEG 52
            NRQIRKICKYLCL V+RLAR R+GPFSLGKVR GGV+ V+IP +F+RRLE+G
Sbjct:  324 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG 375          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.690e-16
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    6 KICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRRLEEG 52
            KICKYLCL V+RLAR  +GPFSLGKVR GGV+ V+IP +F+RRLE+G
Sbjct:   42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG 88          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A2E8YMH6_9HYPH (Pseudouridine synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E8YMH6_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 8.560e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRR 48
            NR+IRKICKY+ L+VSRL R  +GPF+LG +   G+ +V  P+SFL R
Sbjct:  194 NREIRKICKYMDLEVSRLIRYSYGPFNLGNLNKCGIKKV--PNSFLIR 239          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A0N1BWI4_9PROT (Pseudouridine synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1BWI4_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 2.750e-6
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRV-------QIPDSFLRRLEEGKAGG 56
            NR++R++ ++L L VSRL R+ +GPF LGK+ PG V  V       Q+PD F    E   A G
Sbjct:  217 NREVRRVFEWLGLPVSRLIRIAYGPFQLGKLDPGAVEEVPRRVLRDQMPDFFPAEEEPAPADG 279          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A847SYK3_9ARCH (rRNA pseudouridine synthase n=1 Tax=Methanomassiliicoccus sp. TaxID=2528041 RepID=A0A847SYK3_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 4.390e-6
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRR 48
            NR++R I  YL L+V +L RVRFGPFSLGK+  GG+   +IP   L R
Sbjct:  197 NREVRNIMAYLGLQVKQLIRVRFGPFSLGKLPCGGIE--EIPKRVLHR 242          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: UPI000AD0C1B5 (rRNA pseudouridine synthase n=1 Tax=Sphingomonas sp. CCH9-F2 TaxID=1768778 RepID=UPI000AD0C1B5)

HSP 1 Score: 51.2 bits (121), Expect = 4.540e-6
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPD 43
            NR++R++ ++L L+VSRL RVR+GPF LG +  GGV  V++ D
Sbjct:  192 NREVRRVLEHLGLRVSRLIRVRYGPFVLGDLPVGGVGEVRVAD 234          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A2A4IAW3_9SPHN (Pseudouridine synthase n=3 Tax=Sphingomonas TaxID=13687 RepID=A0A2A4IAW3_9SPHN)

HSP 1 Score: 51.2 bits (121), Expect = 5.100e-6
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPD 43
            NR++R++ ++L L+VSRL RVR+GPF LG +  GGV  V++ D
Sbjct:  192 NREVRRVLEHLGLRVSRLIRVRYGPFVLGDLPVGGVGEVRVAD 234          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A257GC70_9SPHN (Pseudouridine synthase n=1 Tax=Novosphingobium sp. PASSN1 TaxID=2015561 RepID=A0A257GC70_9SPHN)

HSP 1 Score: 51.2 bits (121), Expect = 5.150e-6
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRRLEEGKAG 55
            NR++R++ ++L L+VSRL R+R+GPF LG++  GG    ++P   + R  +G AG
Sbjct:  257 NREVRRVLEHLGLEVSRLLRLRYGPFDLGELPRGGAE--EVPQIVVERFRKGLAG 309          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: UPI00068CE4BF (rRNA pseudouridine synthase n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00068CE4BF)

HSP 1 Score: 50.1 bits (118), Expect = 1.150e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRV---QIPDSFLRRLEE 51
            NR+IR+IC++L LKV+RL R  +GPF LG ++ G V  V   Q+ +   R L+E
Sbjct:  196 NREIRRICEHLGLKVNRLLRTAYGPFQLGALKKGEVVEVPRKQLKEQLGRLLDE 249          
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Match: A0A7K4ADH5_9EURY (rRNA pseudouridine synthase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7K4ADH5_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 1.190e-5
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    1 NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRV--QIPDSFLRRLEEGKA 54
            NR++R I  +L LKVSRL RV +GPFSLGK+R   V  V  ++  + LR+  + K+
Sbjct:  210 NREVRNIMSHLGLKVSRLIRVEYGPFSLGKLRKSSVVEVSPRVLKNLLRKYFDDKS 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103461.288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI2.390e-1976.92RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE4.690e-1672.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E8YMH6_9HYPH8.560e-856.25Pseudouridine synthase n=1 Tax=Rhodobiaceae bacter... [more]
A0A0N1BWI4_9PROT2.750e-642.86Pseudouridine synthase n=3 Tax=Alphaproteobacteria... [more]
A0A847SYK3_9ARCH4.390e-654.17rRNA pseudouridine synthase n=1 Tax=Methanomassili... [more]
UPI000AD0C1B54.540e-651.16rRNA pseudouridine synthase n=1 Tax=Sphingomonas s... [more]
A0A2A4IAW3_9SPHN5.100e-651.16Pseudouridine synthase n=3 Tax=Sphingomonas TaxID=... [more]
A0A257GC70_9SPHN5.150e-641.82Pseudouridine synthase n=1 Tax=Novosphingobium sp.... [more]
UPI00068CE4BF1.150e-546.30rRNA pseudouridine synthase n=1 Tax=Thermopetrobac... [more]
A0A7K4ADH5_9EURY1.190e-546.43rRNA pseudouridine synthase n=1 Tax=Euryarchaeota ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..53
e-value: 6.7E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103461contigH-elongata_contig103461:492..659 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103461.288.1mRNA_H-elongata_contig103461.288.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig103461 492..659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig103461.288.1 ID=prot_H-elongata_contig103461.288.1|Name=mRNA_H-elongata_contig103461.288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
NRQIRKICKYLCLKVSRLARVRFGPFSLGKVRPGGVSRVQIPDSFLRRLE
EGKAGG
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