prot_H-elongata_contig102486.218.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig102486.218.1
Unique Name	prot_H-elongata_contig102486.218.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	162

Homology

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 5.130e-94
Identity = 135/158 (85.44%), Postives = 152/158 (96.20%), Query Frame = 0

Query:    4 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 161
            SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPKDALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL++DMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+  LG+LEVELCFKTARFHACAQP+PR
Sbjct:  233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLKDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 390

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.630e-84
Identity = 136/172 (79.07%), Postives = 152/172 (88.37%), Query Frame = 0

Query:    4 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPK--------------DALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 161
            SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPK              DALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL+RDMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+  LG+LEVELCFKTARFHACAQP+PR
Sbjct:  233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKCLSVCVLSLLLRPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 404

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.530e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0

Query:   12 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALV 93
             +D   A+RR GRL KW+GD  LL G+PKDA+E Y  + ++  A  DPLWHAG LEG+AA L A++D + PT    +   L+
Sbjct:  283 AADRARARRRWGRLRKWLGDLALLAGTPKDAVELYDAAAAEL-AKADPLWHAGALEGFAAALVALADDETPTAVPPEIFKLI 363

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A1X6P8K3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8K3_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 1.070e-10
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query:   15 SRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA 74
            S+ AKRR GRL KW+GD  LL+GSP DAL  Y+ ++  +RA+ D LW AG  EG AA LA
Sbjct:  510 SKLAKRRLGRLDKWLGDYFLLIGSPSDALTKYNSAVERSRANSDRLWLAGATEGAAAALA 569

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A4D9D6X0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6X0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query:   22 QGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAA 71
            +GR  KW+GD CLL G+P+DALE Y+Q++++ +A+ +PLW AG LEG+ A
Sbjct:  304 RGRWGKWVGDLCLLAGTPQDALEAYAQALAECKAAGEPLWQAGALEGWIA 353

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A0D2X4E8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4E8_CAPO3)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-9
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0

Query:    7 DREEGVSDSR--SAKRRQ--GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGD 87
            +R  G+ D+R  +A R++  GR  K  GD CLL+GSP DA+ HY++++  T++++D L+ AGCLE +AA L        P V  D
Sbjct:  388 ERTGGIDDARFYNANRKKIVGRFEKLAGDICLLVGSPDDAIVHYTEAIEQTKSANDWLYLAGCLECFAATLLVKHKMGDPLVLSD 472

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S2FJH2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FJH2_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 4.580e-8
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 0

Query:   21 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA-------AMSDADHPTVHGDQALA 91
            R GRL K IGD CL++GSP DALEHY  S    R   D  W A  LEG A  +        A+ D++     G  ALA
Sbjct:   50 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELRRQVGDTCWQAAALEGRACAILLAHHLGIAIDDSEDDADGGTVALA 127

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A830H8L0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8L0_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-7
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 0

Query:   21 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL-------AAMSDADHPTVHGDQALA 91
            R GRL K IGD CL++GSP DALEHY  S   +R   D  W A  LEG A  +        A+ D++     G  ALA
Sbjct:  337 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELSRQVGDTCWQAAALEGRACAILLAHHLGVAIDDSEDDADGGTVALA 414

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S1ES92_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES92_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 2.630e-6
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0

Query:   12 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL 73
               S  ++R++GR+HK +GD  LLLG+  DAL  +  +    RA+ D LW AG +EG  A L
Sbjct:  298 ADSSMLSRRKEGRIHKIVGDHLLLLGAASDALSSFKSASEQCRANSDRLWLAGAIEGEIATL 359

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A5B8MCM1_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCM1_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 4.640e-6
Identity = 41/130 (31.54%), Postives = 56/130 (43.08%), Query Frame = 0

Query:   23 GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARF 152
            GRL K +GD CL + SP DAL HY+ ++  T+   D LWHA  LEG  A                   A  RD      +  A ++    W  + +A     C++A ++   Y  L  L   L  KTA F
Sbjct:  381 GRLKKELGDYCLCVRSPDDALVHYAAALDVTKECGDILWHASALEGTCAV---------------DVCAFFRDNEMVEPV--ASKKLEQLWLSVRQA-----CDQAANL---YKSLPTLRASLLLKTAHF 485

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
D8LGF8_ECTSI	5.130e-94	85.44	OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A6H5J9H9_9PHAE	1.630e-84	79.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835ZHG4_9STRA	2.530e-15	47.56	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1X6P8K3_PORUM	1.070e-10	56.67	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A4D9D6X0_9STRA	1.370e-10	54.00	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A0D2X4E8_CAPO3	1.660e-9	41.18	Uncharacterized protein n=1 Tax=Capsaspora owczarz...	[more]
A0A7S2FJH2_9CHLO	4.580e-8	43.59	Hypothetical protein n=1 Tax=Pycnococcus provasoli...	[more]
A0A830H8L0_9CHLO	1.220e-7	43.59	Uncharacterized protein n=1 Tax=Pycnococcus provas...	[more]
A0A7S1ES92_9RHOD	2.630e-6	41.94	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A5B8MCM1_9CHLO	4.640e-6	31.54	Uncharacterized protein n=2 Tax=Chloropicon primus...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 4..134 e-value: 2.4E-6 score: 28.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 22..98
IPR013935	TRAPP II complex, Trs120	PFAM	PF08626	TRAPPC9-Trs120	coord: 12..98 e-value: 9.6E-13 score: 46.5
IPR013935	TRAPP II complex, Trs120	PANTHER	PTHR21512	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9	coord: 14..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig102486	contig	H-elongata_contig102486:325..1858 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig102486.218.1	mRNA_H-elongata_contig102486.218.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig102486 325..1858 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig102486.218.1 ID=prot_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MYRSWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSM
SDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDR
ELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTA
RFHACAQPSPR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR013935	TRAPP_II_complex_Trs120